RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA401346" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA401346 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
414272 414272 PRJNA401346_P_NODE_7461_length_205_cov_0.888889_g7440_i0 PRJNA401346 7461 205 0.888889 1.82222245 Theileria orientalis 68886 SAR_Eukaryotes SAR_Eukaryotes 69.4 1.78e-7   NTclustered gi|697891993|ref|XM_009692942.1| 869250 g7440 i0 90.566 0.839024390243902 53 3 25 2 120 171 3142 3193 Theileria orientalis strain Shintoku ubiquitin carboxyl-terminal hydrolase partial mRNA blastn 172 69.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria orientalis
29696006 29696006 PRJNA401346_P_NODE_8610_length_201_cov_1.807143_g8589_i0 PRJNA401346 8610 201 1.807143 3.63235743 Cryptosporidium felis 83540 SAR_Eukaryotes SAR_Eukaryotes 75.1 8.29e-14   NR KAF7458343.1 83540 g8589 i0 62.3 4.74626865671642 53 20 79.1 0 187 29 813 865 KAF7458343.1 MutL C terminal dimerization domain protein [Cryptosporidium felis] diamond 954 75.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium felis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;