RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA401346", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA401346 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13168147 13168147 PRJNA401346_P_NODE_8911_length_197_cov_2.808824_g8890_i0 PRJNA401346 8911 197 2.808824 5.53338328 Diplogastrellus gracilis 669117 Nematoda Nematoda 95.3 2.79e-15   NTclustered gi|256709130|gb|GQ422217.1| 669117 g8890 i0 80.488 29.243654822335 123 24 62 0 74 196 723 601 Diplogastrellus gracilis large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 5761 95.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus gracilis
20815796 20815796 PRJNA401346_P_NODE_1077_length_452_cov_1.291560_g1056_i0 PRJNA401346 1077 452 1.29156 5.8378512 Pristionchus pauli 376545 Nematoda Nematoda 281 5.13e-71   NTclustered gi|150982019|gb|EF634598.1| 376545 g1056 i0 80.939 4.49336283185841 362 63 79 6 54 412 37 395 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2031 281 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;