RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA401346", tax_clade = "Sar" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA401346 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28243811 28243811 PRJNA401346_P_NODE_7486_length_205_cov_0.888889_g7465_i0 PRJNA401346 7486 205 0.888889 1.82222245 Perkinsus chesapeaki 330153 SAR_Eukaryotes SAR_Eukaryotes 58.9 4.25e-8   NR KAF4659056.1 330153 g7465 i0 40.4 0.834146341463415 57 33 83.4 1 4 174 133 188 KAF4659056.1 1,3-beta-glucanosyltransferase [Perkinsus chesapeaki] diamond 171 58.9 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki
31071727 31071727 PRJNA401346_P_NODE_2815_length_304_cov_1.316872_g2794_i0 PRJNA401346 2815 304 1.316872 4.00329088 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 119 6.72e-31   NR KAF4715403.1 32597 g2794 i0 54.6 7.57894736842105 97 44 95.7 0 1 291 38 134 KAF4715403.1 RNA-binding protein 8A [Perkinsus olseni] diamond 2304 120 0.991666666666667 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
32162034 32162034 PRJNA401346_P_NODE_2358_length_327_cov_0.951128_g2337_i0 PRJNA401346 2358 327 0.951128 3.11018856 Perkinsus olseni 32597 SAR_Eukaryotes SAR_Eukaryotes 158 6.84e-43   NR KAF4736119.1 32597 g2337 i0 69.8 10.697247706422 106 32 97.2 0 325 8 359 464 KAF4736119.1 hypothetical protein FOZ63_013661, partial [Perkinsus olseni] diamond 3498 158 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;