RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA401346" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA401346 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24640650 24640650 PRJNA401346_P_NODE_5340_length_230_cov_1.136095_g5319_i0 PRJNA401346 5340 230 1.136095 2.6130185 Bacteria 2 Bacteria Bacteria 100 1.6400000000000001e-22   NR MEM7315780.1 2026780 g5319 i0 65.3 22.6304347826087 75 26 97.8 0 4 228 426 500 MEM7315780.1 sodium-translocating pyrophosphatase [Planctomycetota bacterium] diamond 5205 101 0.99009900990099 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
26600297 26600297 PRJNA401346_P_NODE_2901_length_301_cov_1.066667_g2880_i0 PRJNA401346 2901 301 1.066667 3.21066767 Chlamydiales bacterium 2047757 Bacteria Bacteria 142 5.53e-41   NR MCP5470420.1 2047757 g2880 i0 80.8 0.98671096345515 99 19 98.7 0 300 4 32 130 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 297 142 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
28433506 28433506 PRJNA401346_P_NODE_6346_length_209_cov_0.864865_g6325_i0 PRJNA401346 6346 209 0.864865 1.80756785 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 145 1.11e-38   NR MCP4096080.1 2026779 g6325 i0 100 0.990430622009569 69 0 99 0 2 208 223 291 MCP4096080.1 hypothetical protein [Planctomycetaceae bacterium] diamond 207 145 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium
30517768 30517768 PRJNA401346_P_NODE_5593_length_224_cov_1.177914_g5572_i0 PRJNA401346 5593 224 1.177914 2.63852736 Chlamydiales bacterium 2047757 Bacteria Bacteria 96.7 2.1599999999999998e-23   NR MCP5470420.1 2047757 g5572 i0 75.7 0.991071428571429 74 18 99.1 0 222 1 61 134 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 222 96.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31845339 31845339 PRJNA401346_P_NODE_1097_length_448_cov_2.863049_g1076_i0 PRJNA401346 1097 448 2.863049 12.82645952 Simkania sp. 34094 Bacteria Bacteria 237 1.22e-77   NR MCB1084350.1 34094 g1076 i0 76.1 0.950892857142857 142 34 95.1 0 20 445 5 146 MCB1084350.1 MC/SLC25 family protein [Simkania sp.] diamond 426 237 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;