RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA401346" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA401346 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27724330 27724330 PRJNA401346_P_NODE_2684_length_310_cov_0.959839_g2663_i0 PRJNA401346 2684 310 0.959839 2.9755009 Candidatus Nanosynbacter 2093823 Bacteria Bacteria 97.4 6.68e-24   NR TWP22397.1 713054 g2663 i0 46.3 2.77741935483871 95 51 91.9 0 26 310 2 96 TWP22397.1 hypothetical protein EUA67_00115 [TM7 phylum sp. oral taxon 352] diamond 861 98.2 0.991853360488798 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 352
28623025 28623025 PRJNA401346_P_NODE_1847_length_360_cov_2.351171_g1826_i0 PRJNA401346 1847 360 2.351171 8.4642156 Candidatus Dojkabacteria bacterium 2099670 Bacteria Bacteria 236 6.04e-78   NR HRO65834.1 2099670 g1826 i0 99.2 0.991666666666667 119 1 99.2 0 359 3 24 142 HRO65834.1 uL15 family ribosomal protein [Candidatus Dojkabacteria bacterium] diamond 357 236 1 Bacteria Bacteria candidate phyla             Candidatus Dojkabacteria bacterium
30043750 30043750 PRJNA401346_P_NODE_1091_length_450_cov_1.151671_g1070_i0 PRJNA401346 1091 450 1.151671 5.1825195 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 74.7 9.54e-15   NR MBN9398195.1 2026720 g1070 i0 61.4 0.38 57 22 38 0 151 321 1 57 MBN9398195.1 hypothetical protein [Candidatus Saccharibacteria bacterium] diamond 171 74.7 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
30423323 30423323 PRJNA401346_P_NODE_1173_length_435_cov_3.371658_g1152_i0 PRJNA401346 1173 435 3.371658 14.6667123 Candidatus Dojkabacteria bacterium 2099670 Bacteria Bacteria 281 1.71e-95   NR HRO65834.1 2099670 g1152 i0 98.6 0.993103448275862 144 2 99.3 0 433 2 2 145 HRO65834.1 uL15 family ribosomal protein [Candidatus Dojkabacteria bacterium] diamond 432 281 1 Bacteria Bacteria candidate phyla             Candidatus Dojkabacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;