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contig_metadata

26 rows where bioproject = "PRJNA400391" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 26 ✖

tax_clade 1

bioproject 1

  • PRJNA400391 · 26 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1688881 1688881 PRJNA400391_S_NODE_2762_length_241_cov_6.135922_g2701_i0 PRJNA400391 2762 241 6.135922 14.78757202 Elongisporangium undulatum 127444 SAR_Eukaryotes SAR_Eukaryotes 226 1.2099999999999997e-54   NTclustered gi|33520249|gb|AY273994.1| 127444 g2701 i0 83.539 100.966804979253 243 38 100 1 1 241 464 706 Pythium undulatum large subunit ribosomal RNA gene, partial sequence blastn 24333 226 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Elongisporangium Elongisporangium undulatum
2356484 2356484 PRJNA400391_S_NODE_5022_length_176_cov_7.007092_g4961_i0 PRJNA400391 5022 176 7.007092 12.33248192 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 276 8.090000000000001e-70   NTclustered gi|2661426469|ref|XR_009934769.1| 403677 g4961 i0 94.886 99.9375 176 9 100 0 1 176 1799 1624 Phytophthora infestans T30-4 28S ribosomal RNA (PITG_33375), rRNA blastn 17589 276 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
3631861 3631861 PRJNA400391_S_NODE_3883_length_204_cov_29.520710_g3822_i0 PRJNA400391 3883 204 29.52071 60.2222484 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 355 1.21e-93   NTclustered gi|505574758|gb|AY598618.2| 41045 g3822 i0 98.039 99.9901960784314 204 4 100 0 1 204 1331 1534 Pythium oligandrum strain CBS 382.34 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 20398 355 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
6791758 6791758 PRJNA400391_S_NODE_166_length_625_cov_23.840678_g120_i0 PRJNA400391 166 625 23.840678 149.0042375 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 725 0   NTclustered gi|33520250|gb|AY273995.1| 92964 g120 i0 92.549 83.072 510 30 81 2 119 625 1 505 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 51920 725 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
7458971 7458971 PRJNA400391_S_NODE_3406_length_218_cov_4.387978_g3345_i0 PRJNA400391 3406 218 4.387978 9.56579204 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 348 2.19e-91   NTclustered gi|511773433|gb|KC495032.1| 162101 g3345 i0 98.01 92.197247706422 201 3 92 1 19 218 116 316 Peronospora rumicis isolate HV312 28S ribosomal RNA gene, partial sequence blastn 20099 348 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora rumicis
8067356 8067356 PRJNA400391_S_NODE_1707_length_297_cov_37.541985_g1646_i0 PRJNA400391 1707 297 37.541985 111.49969545 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 100 9.71e-17   NTclustered gi|325194684|emb|FR825494.1| 890382 g1646 i0 83.962 12.1885521885522 106 16 36 1 7 112 453 349 Albugo laibachii Nc14, genomic contig CONTIG_2365_NC14_v4_847_33331 blastn 3620 100 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
8733844 8733844 PRJNA400391_S_NODE_2907_length_236_cov_1.820896_g2846_i0 PRJNA400391 2907 236 1.820896 4.29731456 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.021   NTclustered gi|2702708676|gb|PP528478.1| 162098 g2846 i0 90.244 1.04237288135593 41 3 17 1 189 229 644 605 Peronospora myosotidis voucher GLM-F73872 large subunit ribosomal RNA gene, partial sequence blastn 246 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora myosotidis
10009082 10009082 PRJNA400391_S_NODE_1688_length_298_cov_4.646388_g1627_i0 PRJNA400391 1688 298 4.646388 13.84623624 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 379 1.12e-100   NTclustered gi|2440150|emb|X75631.1| 4788 g1627 i0 89.632 92.5637583892617 299 29 100 2 1 298 2231 2528 P.megasperma gene for 28S ribosomal RNA blastn 27584 379 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
11284319 11284319 PRJNA400391_S_NODE_2669_length_245_cov_9.923810_g2608_i0 PRJNA400391 2669 245 9.92381 24.3133345 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 398 2.47e-106   NTclustered gi|403181178|gb|JN635100.1| 4792 g2608 i0 98.667 91.7959183673469 225 2 91 1 1 224 99 323 Phytophthora nicotianae isolate WPC6915A658 18S ribosomal RNA gene, partial sequence blastn 22490 398 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
11284343 11284343 PRJNA400391_S_NODE_4409_length_190_cov_21.658065_g4348_i0 PRJNA400391 4409 190 21.658065 41.1503235 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 351 1.4399999999999997e-92   NTclustered gi|338798115|gb|HQ665176.1| 82941 g4348 i0 100 100.042105263158 190 0 100 0 1 190 978 789 Pythium myriotylum isolate CBS 254.70 28S large subunit ribosomal RNA gene, partial sequence blastn 19008 351 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium myriotylum
12559700 12559700 PRJNA400391_S_NODE_1830_length_290_cov_4.690196_g1769_i0 PRJNA400391 1830 290 4.690196 13.6015684 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 335 2.379999999999999e-87   NTclustered gi|403181234|gb|JN635156.1| 669489 g1769 i0 87.713 100.8 293 29 100 6 1 290 586 874 Phytophthora frigida isolate WPC16054D1635 18S ribosomal RNA gene, partial sequence blastn 29232 335 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora frigida
13167848 13167848 PRJNA400391_S_NODE_3491_length_215_cov_2.944444_g3430_i0 PRJNA400391 3491 215 2.944444 6.3305546 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 364 2.139999999999999e-96   NTclustered gi|33520250|gb|AY273995.1| 92964 g3430 i0 97.209 101.73488372093 215 6 100 0 1 215 716 502 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 21873 364 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
14442942 14442942 PRJNA400391_S_NODE_132_length_656_cov_21.657005_g95_i0 PRJNA400391 132 656 21.657005 142.0699528 Phytophthora boehmeriae 109152 SAR_Eukaryotes SAR_Eukaryotes 819 0   NTclustered gi|90655127|gb|DQ361248.1| 109152 g95 i0 93.381 86.7926829268293 559 28 85 5 102 656 11 564 Phytophthora boehmeriae large subunit ribosomal RNA gene, partial sequence blastn 56936 819 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora boehmeriae
14443035 14443035 PRJNA400391_S_NODE_4732_length_183_cov_3.952703_g4671_i0 PRJNA400391 4732 183 3.952703 7.23344649 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 169 1.4799999999999998e-37   NTclustered gi|325194632|emb|FR825445.1| 890382 g4671 i0 83.511 88.5628415300546 188 23 100 4 1 183 433 617 Albugo laibachii Nc14, genomic contig CONTIG_2284_NC14_v4_911_15847 blastn 16207 169 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
15716802 15716802 PRJNA400391_S_NODE_4693_length_184_cov_3.510067_g4632_i0 PRJNA400391 4693 184 3.510067 6.45852328 Leptolegnia sp. CBS 177.86 170620 SAR_Eukaryotes SAR_Eukaryotes 76.8 9.31e-10   NTclustered gi|17224985|gb|AF320588.1| 170620 g4632 i0 94 27.3423913043478 50 3 27 0 135 184 275 226 Leptolegnia sp. CBS177.86 28S ribosomal RNA gene, partial sequence blastn 5031 76.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Leptolegnia Leptolegnia sp. CBS 177.86
15716823 15716823 PRJNA400391_S_NODE_5513_length_168_cov_3.842105_g5452_i0 PRJNA400391 5513 168 3.842105 6.4547364 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 152 1.35e-32   NTclustered gi|338798042|gb|HQ665103.1| 2052682 g5452 i0 83.234 33.1130952380952 167 26 99 2 1 167 758 594 Pythium ultimum isolate CBS 122650 28S large subunit ribosomal RNA gene, partial sequence blastn 5563 152 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
18265684 18265684 PRJNA400391_S_NODE_3255_length_223_cov_2.095745_g3194_i0 PRJNA400391 3255 223 2.095745 4.67351135 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 111 3.22e-20   NTclustered gi|325194684|emb|FR825494.1| 890382 g3194 i0 79.412 1.67264573991031 170 25 74 8 60 223 202 37 Albugo laibachii Nc14, genomic contig CONTIG_2365_NC14_v4_847_33331 blastn 373 111 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
18265718 18265718 PRJNA400391_S_NODE_4435_length_190_cov_1.464516_g4374_i0 PRJNA400391 4435 190 1.464516 2.7825804 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 318 1.46e-82   NTclustered gi|937408816|ref|NC_027966.1| 114742 g4374 i0 96.842 103 190 6 100 0 1 190 10652 10841 Pythium insidiosum mitochondrial DNA, complete genome blastn 19570 318 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
18932554 18932554 PRJNA400391_S_NODE_5135_length_174_cov_4.424460_g5074_i0 PRJNA400391 5135 174 4.42446 7.6985604 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 237 3.77e-58   NTclustered gi|299764602|gb|GQ919079.1| 281402 g5074 i0 92.216 97.2183908045977 167 13 96 0 8 174 688 854 Saprolegnia australis 28S large subunit ribosomal RNA gene, partial sequence blastn 16916 237 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia australis
19539910 19539910 PRJNA400391_S_NODE_6596_length_151_cov_1.922414_g6535_i0 PRJNA400391 6596 151 1.922414 2.90284514 Phytophthora gonapodyides 78237 SAR_Eukaryotes SAR_Eukaryotes 265 1.4499999999999998e-66   NTclustered gi|2314988977|ref|NC_067074.1| 78237 g6535 i0 99.315 96.6887417218543 146 1 97 0 6 151 40878 40733 Phytophthora gonapodyides voucher P7050 mitochondrion, complete genome blastn 14600 265 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora gonapodyides
20207196 20207196 PRJNA400391_S_NODE_1056_length_353_cov_3.610063_g995_i0 PRJNA400391 1056 353 3.610063 12.74352239 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 396 1.34e-105   NTclustered gi|403181159|gb|JN635081.1| 129359 g995 i0 87.151 101.407932011331 358 35 99 9 4 353 940 586 Phytophthora porri isolate WPC7899A295 18S ribosomal RNA gene, partial sequence blastn 35797 396 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora porri
20815675 20815675 PRJNA400391_S_NODE_1557_length_307_cov_15.525735_g1496_i0 PRJNA400391 1557 307 15.525735 47.66400645 Lagenidium sp. SL10 1702235 SAR_Eukaryotes SAR_Eukaryotes 532 8.389999999999998e-147   NTclustered gi|918464140|gb|KT257379.1| 1702235 g1496 i0 98.046 99.9837133550489 307 5 100 1 1 307 3650 3955 Lagenidium sp. SL10 isolate LEV5850 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 30695 532 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium sp. SL10
21482716 21482716 PRJNA400391_S_NODE_1957_length_282_cov_17.506073_g1896_i0 PRJNA400391 1957 282 17.506073 49.36712586 Elongisporangium 1448050 SAR_Eukaryotes SAR_Eukaryotes 462 1.01e-125   NTclustered gi|505574783|gb|AY598652.2| 104971 g1896 i0 96.429 99.2198581560284 280 10 99 0 1 280 2880 2601 Elongisporangium prolatum strain CBS 845.68 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 27980 462 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Elongisporangium Elongisporangium prolatum
22090499 22090499 PRJNA400391_S_NODE_2738_length_242_cov_6.787440_g2677_i0 PRJNA400391 2738 242 6.78744 16.4256048 Phytophthora megasperma 4788 SAR_Eukaryotes SAR_Eukaryotes 307 4.21e-79   NTclustered gi|2440150|emb|X75631.1| 4788 g2677 i0 89.669 75.6363636363636 242 24 100 1 1 242 3418 3658 P.megasperma gene for 28S ribosomal RNA blastn 18304 307 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
22758031 22758031 PRJNA400391_S_NODE_998_length_358_cov_15.647059_g937_i0 PRJNA400391 998 358 15.647059 56.01647122 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 601 2.6799999999999996e-167   NTclustered gi|403181146|gb|JN635068.1| 53985 g937 i0 96.936 100.284916201117 359 10 100 1 1 358 586 944 Phytophthora fragariae isolate WPC3820A203 18S ribosomal RNA gene, partial sequence blastn 35902 606 0.991749174917492 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae
24640411 24640411 PRJNA400391_S_NODE_1660_length_300_cov_2.030189_g1599_i0 PRJNA400391 1660 300 2.030189 6.090567 uncultured Oomycota 179533 SAR_Eukaryotes SAR_Eukaryotes 505 1.7799999999999995e-138   NTclustered gi|307940020|gb|HM441697.1| 179533 g1599 i0 97 100.396666666667 300 9 100 0 1 300 164 463 Uncultured oomycete clone o24-Tim-6 large subunit ribosomal RNA gene, partial sequence blastn 30119 505 1 Eukaryota Sar   Oomycota         uncultured Oomycota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;