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contig_metadata

20 rows where bioproject = "PRJNA400391" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 20 ✖

tax_clade 1

bioproject 1

  • PRJNA400391 · 20 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
413992 413992 PRJNA400391_S_NODE_21_length_993_cov_13.757829_g12_i0 PRJNA400391 21 993 13.757829 136.61524197 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 1596 0   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g12 i0 95.67 17.1993957703927 993 43 100 0 1 993 1872 2864 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17079 1596 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
2964824 2964824 PRJNA400391_S_NODE_3863_length_205_cov_1.400000_g3802_i0 PRJNA400391 3863 205 1.4 2.87 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 379 7.229999999999999e-101   NTclustered gi|2874368078|gb|PQ819802.1| 74082 g3802 i0 100 9.39024390243902 205 0 100 0 1 205 207 411 Vahlkampfia avara strain CCAP 1588/1A small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 1925 379 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
4241155 4241155 PRJNA400391_S_NODE_3644_length_211_cov_3.988636_g3583_i0 PRJNA400391 3644 211 3.988636 8.41602196 Naegleria jamiesoni 36335 Heterolobosea other_Eukaryota 372 1.25e-98   NTclustered gi|2351573|gb|U80061.1|NJU80061 36335 g3583 i0 98.104 100.132701421801 211 4 100 0 1 211 1392 1602 Naegleria jamiesoni 18S ribosomal RNA gene, partial sequence blastn 21128 372 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria jamiesoni
4241222 4241222 PRJNA400391_S_NODE_64_length_760_cov_20.991724_g42_i0 PRJNA400391 64 760 20.991724 159.5371024 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 1230 0   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g42 i0 95.921 17.8328947368421 760 30 99 1 1 759 3557 4316 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13553 1230 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
4909023 4909023 PRJNA400391_S_NODE_2804_length_239_cov_23.151961_g2743_i0 PRJNA400391 2804 239 23.151961 55.33318679 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 424 3.95e-114   NTclustered gi|399764157|gb|JQ271668.1| 1217110 g2743 i0 98.739 71.4016736401674 238 3 99 0 2 239 1774 1537 Allovahlkampfia sp. PKD 2011a strain 4165 18S ribosomal RNA gene, partial sequence blastn 17065 424 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
5517857 5517857 PRJNA400391_S_NODE_4965_length_178_cov_2.307692_g4904_i0 PRJNA400391 4965 178 2.307692 4.10769176 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 329 6.21e-86   NTclustered gi|2874368078|gb|PQ819802.1| 74082 g4904 i0 100 9.5 178 0 100 0 1 178 1654 1477 Vahlkampfia avara strain CCAP 1588/1A small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 1691 329 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
6184120 6184120 PRJNA400391_S_NODE_2725_length_243_cov_1.850962_g2664_i0 PRJNA400391 2725 243 1.850962 4.49783766 Naegleria 5761 Heterolobosea other_Eukaryota 418 1.8699999999999998e-112   NTclustered gi|2618963742|gb|OR769034.1| 5762 g2664 i0 97.551 94.4526748971193 245 4 100 1 1 243 289 45 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 22952 418 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
6791861 6791861 PRJNA400391_S_NODE_6146_length_158_cov_1.536585_g6085_i0 PRJNA400391 6146 158 1.536585 2.4278043 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 84.2 4.63e-12   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g6085 i0 94.444 0.537974683544304 54 3 34 0 105 158 3856 3909 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 85 84.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
8067419 8067419 PRJNA400391_S_NODE_4967_length_178_cov_2.125874_g4906_i0 PRJNA400391 4967 178 2.125874 3.78405572 uncultured Naegleria 229031 Heterolobosea other_Eukaryota 329 6.21e-86   NTclustered gi|2206187144|gb|OM946760.1| 229031 g4906 i0 100 100 178 0 100 0 1 178 114 291 Uncultured Naegleria clone STP_B-CJ-60 small subunit ribosomal RNA gene, partial sequence blastn 17800 329 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae   uncultured Naegleria
8067428 8067428 PRJNA400391_S_NODE_5407_length_170_cov_1.725926_g5346_i0 PRJNA400391 5407 170 1.725926 2.9340742 Tetramitus jugosus 166959 Heterolobosea other_Eukaryota 169 1.35e-37   NTclustered gi|2233316042|emb|OW569396.1| 166959 g5346 i0 95.327 85.2117647058824 107 4 62 1 55 160 21006 20900 Tetramitus jugosus genome assembly, organelle: mitochondrion blastn 14486 169 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Tetramitus Tetramitus jugosus
13834556 13834556 PRJNA400391_S_NODE_5151_length_174_cov_2.035971_g5090_i0 PRJNA400391 5151 174 2.035971 3.54258954 Naegleria 5761 Heterolobosea other_Eukaryota 316 4.7e-82   NTclustered gi|2618963742|gb|OR769034.1| 5762 g5090 i0 99.425 15.5344827586207 174 1 100 0 1 174 3824 3651 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 2703 316 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
13834569 13834569 PRJNA400391_S_NODE_611_length_422_cov_6.436693_g551_i0 PRJNA400391 611 422 6.436693 27.16284446 Naegleria 5761 Heterolobosea other_Eukaryota 741 0   NTclustered gi|1212004549|gb|MF399032.1| 37103 g551 i0 98.341 100.004739336493 422 7 100 0 1 422 571 150 Naegleria sp. isolate PA8 small subunit ribosomal RNA gene, partial sequence blastn 42202 747 0.991967871485944 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
16991634 16991634 PRJNA400391_S_NODE_514_length_448_cov_2.191283_g454_i0 PRJNA400391 514 448 2.191283 9.81694784 Naegleria pringsheimi 234921 Heterolobosea other_Eukaryota 723 0   NTclustered gi|2515557648|gb|OR045415.1| 234921 g454 i0 98.072 28.203125 415 8 93 0 1 415 5383 5797 Naegleria pringsheimi strain Singh(s) rDNA-containing extrachromosomal element genomic sequence; 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 12635 723 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria pringsheimi
18265732 18265732 PRJNA400391_S_NODE_5095_length_175_cov_1.742857_g5034_i0 PRJNA400391 5095 175 1.742857 3.04999975 Naegleria australiensis 51634 Heterolobosea other_Eukaryota 313 6.13e-81   NTclustered gi|2476253407|gb|OQ627480.1| 51634 g5034 i0 98.857 29.3657142857143 175 2 100 0 1 175 4452 4626 Naegleria australiensis strain PP397 rDNA-containing extrachromosomal element genomic sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 5139 313 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
18932518 18932518 PRJNA400391_S_NODE_2755_length_241_cov_13.111650_g2694_i0 PRJNA400391 2755 241 13.11165 31.5990765 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 436 5.129999999999999e-118   NTclustered gi|399764157|gb|JQ271668.1| 1217110 g2694 i0 99.582 79.954356846473 239 1 99 0 3 241 1997 1759 Allovahlkampfia sp. PKD 2011a strain 4165 18S ribosomal RNA gene, partial sequence blastn 19269 436 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
20815668 20815668 PRJNA400391_S_NODE_117_length_678_cov_14.368585_g82_i0 PRJNA400391 117 678 14.368585 97.4190063 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 1219 0   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g82 i0 99.116 58.6120943952802 679 5 100 1 1 678 2882 3560 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 39739 1219 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
23366159 23366159 PRJNA400391_S_NODE_379_length_486_cov_27.747228_g320_i0 PRJNA400391 379 486 27.747228 134.85152808 Allovahlkampfia sp. PKD 2011a 1217110 Heterolobosea other_Eukaryota 898 0   NTclustered gi|399764157|gb|JQ271668.1| 1217110 g320 i0 100 39.1748971193416 486 0 100 0 1 486 25 510 Allovahlkampfia sp. PKD 2011a strain 4165 18S ribosomal RNA gene, partial sequence blastn 19039 898 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
23366221 23366221 PRJNA400391_S_NODE_939_length_364_cov_2.650456_g878_i0 PRJNA400391 939 364 2.650456 9.64765984 Naegleria australiensis 51634 Heterolobosea other_Eukaryota 645 1.2499999999999996e-180   NTclustered gi|2476253407|gb|OQ627480.1| 51634 g878 i0 98.626 39.0274725274725 364 5 100 0 1 364 2695 2332 Naegleria australiensis strain PP397 rDNA-containing extrachromosomal element genomic sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 14206 645 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
24032783 24032783 PRJNA400391_S_NODE_3279_length_222_cov_2.679144_g3218_i0 PRJNA400391 3279 222 2.679144 5.94769968 Naegleria 5761 Heterolobosea other_Eukaryota 388 1.32e-103   NTclustered gi|2618963742|gb|OR769034.1| 5762 g3218 i0 98.198 23.8558558558559 222 4 100 0 1 222 3298 3519 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 5296 388 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
25307198 25307198 PRJNA400391_S_NODE_4320_length_193_cov_4.139241_g4259_i0 PRJNA400391 4320 193 4.139241 7.98873513 Naegleria 5761 Heterolobosea other_Eukaryota 158 3.43e-34   NTclustered gi|2618963742|gb|OR769034.1| 5762 g4259 i0 83.237 8.06735751295337 173 28 90 1 19 191 5228 5057 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 1557 158 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;