RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA400391" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA400391 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10617911 10617911 PRJNA400391_S_NODE_1029_length_355_cov_2.956250_g968_i0 PRJNA400391 1029 355 2.95625 10.4946875 Protopterus annectens 7888 Chordata Chordata 99 4.25e-16   NTclustered gi|2119030767|ref|XR_006366539.1| 7888 g968 i0 78.395 0.645070422535211 162 28 44 4 199 353 1333 1172 PREDICTED: Protopterus annectens 28S ribosomal RNA (LOC122812577), rRNA blastn 229 99 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
18932511 18932511 PRJNA400391_S_NODE_2155_length_272_cov_3.105485_g2094_i0 PRJNA400391 2155 272 3.105485 8.4469192 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 126 1.45e-24   NTclustered gi|6175639|gb|AF158726.1|AF158726 34764 g2094 i0 86.842 26.4264705882353 114 14 42 1 98 211 2660 2772 Oikopleura sp. internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 7188 126 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura sp.
24640428 24640428 PRJNA400391_S_NODE_240_length_562_cov_19.045541_g190_i0 PRJNA400391 240 562 19.045541 107.03594042 Mus musculus 10090 Chordata Chordata 318 4.949999999999998e-82   NTclustered gi|2904935057|gb|PQ737980.1| 10090 g190 i0 84.337 5.80604982206406 332 44 59 8 163 491 384 58 Mus musculus lncRNA390 lncRNA, complete sequence blastn 3263 318 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
29302637 29302637 PRJNA400391_S_NODE_5209_length_173_cov_3.297101_g5148_i0 PRJNA400391 5209 173 3.297101 5.70398473 Opisthokonta 33154 Chordata Chordata 58.5 1.51e-8   NR CAK8674078.1 159417 g5148 i0 55.1 4.2485549132948 49 22 85 0 3 149 145 193 CAK8674078.1 unnamed protein product [Clavelina lepadiformis] diamond 735 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
30707260 30707260 PRJNA400391_S_NODE_3274_length_222_cov_9.893048_g3213_i0 PRJNA400391 3274 222 9.893048 21.96256656 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 54.3 2.43e-6   NR CAI9150999.1 3082113 g3213 i0 96.6 0.391891891891892 29 1 39.2 0 222 136 501 529 CAI9150999.1 unnamed protein product, partial [Rangifer tarandus platyrhynchus] diamond 87 54.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus
31655495 31655495 PRJNA400391_S_NODE_5477_length_169_cov_1.820896_g5416_i0 PRJNA400391 5477 169 1.820896 3.07731424 Clavelina lepadiformis 159417 Chordata Chordata 56.2 2.28e-7   NR CAK8676354.1 159417 g5416 i0 52.8 1.81065088757396 53 25 94.1 0 3 161 305 357 CAK8676354.1 unnamed protein product [Clavelina lepadiformis] diamond 306 56.2 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;