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contig_metadata

15 rows where bioproject = "PRJNA400391", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 15 ✖

tax_phylum 1

  • Bdellovibrionota · 15 ✖

tax_kingdom 1

bioproject 1

  • PRJNA400391 · 15 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2356507 2356507 PRJNA400391_S_NODE_842_length_375_cov_5.979412_g781_i0 PRJNA400391 842 375 5.979412 22.422795 Bacteriovorax 146784 Bacteria Bacteria 669 0   NTclustered gi|1700689994|gb|CP030035.1| 960 g781 i0 98.93 25.6506666666667 374 4 99 0 2 375 1661618 1661991 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 9619 669 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
3631902 3631902 PRJNA400391_S_NODE_603_length_423_cov_9.180412_g543_i0 PRJNA400391 603 423 9.180412 38.83314276 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 656 0   NTclustered gi|507148233|ref|NR_103040.1| 453816 g543 i0 95.204 167.981087470449 417 16 98 3 10 423 999 584 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 71056 656 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
4241094 4241094 PRJNA400391_S_NODE_1164_length_340_cov_86.619672_g1103_i0 PRJNA400391 1164 340 86.619672 294.5068848 Fluviispira vulneris 2763012 Bacteria Bacteria 364 3.6299999999999996e-96   NTclustered gi|1889345316|gb|MT879459.1| 2763012 g1103 i0 91.078 111.4 269 24 79 0 72 340 68 336 Fluviispira vulneris strain GX5518 16S ribosomal RNA gene, partial sequence blastn 37876 364 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Fluviispira Fluviispira vulneris
4241187 4241187 PRJNA400391_S_NODE_4904_length_179_cov_165.458333_g4843_i0 PRJNA400391 4904 179 165.458333 296.17041607 uncultured Bdellovibrio sp. 239744 Bacteria Bacteria 257 2.99e-64   NTclustered gi|679036719|gb|KM016289.1| 239744 g4843 i0 92.737 110.631284916201 179 12 99 1 2 179 65 243 Uncultured Bdellovibrio sp. clone CO2-OTU4 16S ribosomal RNA gene, partial sequence blastn 19803 257 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio uncultured Bdellovibrio sp.
7458991 7458991 PRJNA400391_S_NODE_4686_length_184_cov_6.731544_g4625_i0 PRJNA400391 4686 184 6.731544 12.38604096 Bacteriovorax 146784 Bacteria Bacteria 331 1.8000000000000002e-86   NTclustered gi|1700689994|gb|CP030035.1| 960 g4625 i0 99.451 427.304347826087 182 1 99 0 1 182 1663203 1663022 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 78624 331 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
7459010 7459010 PRJNA400391_S_NODE_626_length_419_cov_4.989583_g566_i0 PRJNA400391 626 419 4.989583 20.90635277 Bacteriovorax 146784 Bacteria Bacteria 664 0   NTclustered gi|1700689994|gb|CP030035.1| 960 g566 i0 95.227 165.195704057279 419 20 100 0 1 419 1660767 1660349 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 69217 664 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
8733898 8733898 PRJNA400391_S_NODE_687_length_402_cov_4.534060_g627_i0 PRJNA400391 687 402 4.53406 18.2269212 Pseudobdellovibrio 2862745 Bacteria Bacteria 531 4.06e-146   NTclustered gi|507148233|ref|NR_103040.1| 453816 g627 i0 90.547 267.649253731343 402 37 100 1 1 402 1111 1511 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 107595 531 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
11284312 11284312 PRJNA400391_S_NODE_2169_length_271_cov_4.584746_g2108_i0 PRJNA400391 2169 271 4.584746 12.42466166 Bacteriovorax 146784 Bacteria Bacteria 460 3.4799999999999997e-125   NTclustered gi|1700689994|gb|CP030035.1| 960 g2108 i0 97.417 169.20295202952 271 5 99 2 1 270 1662353 1662622 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 45854 460 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
16383423 16383423 PRJNA400391_S_NODE_2533_length_252_cov_4.087558_g2472_i0 PRJNA400391 2533 252 4.087558 10.30064616 Bdellovibrio 958 Bacteria Bacteria 401 1.9699999999999995e-107   NTclustered gi|2800917394|gb|CP168972.1| 959 g2472 i0 95.6 93.6150793650794 250 11 99 0 3 252 749212 749461 Bdellovibrio bacteriovorus strain Bd19 chromosome, complete genome blastn 23591 401 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
18265735 18265735 PRJNA400391_S_NODE_5255_length_172_cov_3.248175_g5194_i0 PRJNA400391 5255 172 3.248175 5.586861 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 154 3.84e-33   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g5194 i0 83.14 125.854651162791 172 25 99 4 1 170 666000 665831 Bdellovibrio sp. qaytius chromosome, complete genome blastn 21647 154 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
20815685 20815685 PRJNA400391_S_NODE_1997_length_280_cov_18.685714_g1936_i0 PRJNA400391 1997 280 18.685714 52.3199992 Bacteriovorax stolpii 960 Bacteria Bacteria 405 1.72e-108   NTclustered gi|1700689994|gb|CP030035.1| 960 g1936 i0 94.007 310.292857142857 267 16 95 0 1 267 1661394 1661128 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 86882 405 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
22090477 22090477 PRJNA400391_S_NODE_1878_length_287_cov_4.567460_g1817_i0 PRJNA400391 1878 287 4.56746 13.1086102 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 470 6.18e-128   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g1817 i0 96.167 32.5783972125436 287 11 100 0 1 287 1292599 1292313 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 9350 470 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
22090582 22090582 PRJNA400391_S_NODE_5978_length_160_cov_4.000000_g5917_i0 PRJNA400391 5978 160 4 6.4 uncultured Bacteriovorax sp. 346638 Bacteria Bacteria 296 5.55e-76   NTclustered gi|1820356865|gb|MT177531.1| 346638 g5917 i0 100 99.99375 160 0 100 0 1 160 194 35 Uncultured Bacteriovorax sp. clone 197 16S ribosomal RNA gene, partial sequence blastn 15999 296 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax uncultured Bacteriovorax sp.
24032811 24032811 PRJNA400391_S_NODE_499_length_451_cov_4.360577_g439_i0 PRJNA400391 499 451 4.360577 19.66620227 Peredibacter 263370 Bacteria Bacteria 667 0   NTclustered gi|2631252187|gb|CP139487.1| 28202 g439 i0 94.091 131.70066518847 440 24 97 2 13 451 512566 512128 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 59397 667 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
25307177 25307177 PRJNA400391_S_NODE_280_length_532_cov_10.543260_g226_i0 PRJNA400391 280 532 10.54326 56.0901432 Pseudobdellovibrio 2862745 Bacteria Bacteria 540 9.14e-149   NTclustered gi|507148233|ref|NR_103040.1| 453816 g226 i0 85.165 203.586466165414 546 60 100 18 1 532 584 1122 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 108308 540 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;