RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA400391", tax_kingdom = "Metazoa" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 4 ✖

tax_kingdom 1

  • Metazoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA400391 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
413983 413983 PRJNA400391_S_NODE_1901_length_285_cov_65.200000_g1840_i0 PRJNA400391 1901 285 65.2 185.82 Lumbriculus sp. EZ-2019 2480966 Annelida Annelida 272 1.86e-68   NTclustered gi|1494622620|gb|MK076419.1| 2480966 g1840 i0 93.011 3.64912280701754 186 13 65 0 100 285 3542 3357 Lumbriculus sp. EZ-2019 isolate ANN_LUMva large subunit ribosomal RNA gene, partial sequence blastn 1040 272 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Lumbriculida Lumbriculidae Lumbriculus Lumbriculus sp. EZ-2019
12559742 12559742 PRJNA400391_S_NODE_5270_length_172_cov_2.029197_g5209_i0 PRJNA400391 5270 172 2.029197 3.49021884 Polychaeta 6341 Annelida Annelida 121 3.9e-23   NTclustered gi|2172937611|gb|OM135245.1| 2907852 g5209 i0 79.545 98.6279069767442 176 31 100 5 1 172 6933 6759 Chloeia sp. r EEE-2022 voucher UCNSCB-6857 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16964 121 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Eunicida Amphinomidae Chloeia Chloeia sp. r EEE-2022
15716744 15716744 PRJNA400391_S_NODE_2273_length_265_cov_7.534783_g2212_i0 PRJNA400391 2273 265 7.534783 19.96717495 Lumbriculus sp. EZ-2019 2480966 Annelida Annelida 217 8.119999999999999e-52   NTclustered gi|1494622620|gb|MK076419.1| 2480966 g2212 i0 87.701 3.13207547169811 187 22 71 1 79 265 3542 3357 Lumbriculus sp. EZ-2019 isolate ANN_LUMva large subunit ribosomal RNA gene, partial sequence blastn 830 217 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Lumbriculida Lumbriculidae Lumbriculus Lumbriculus sp. EZ-2019
17658619 17658619 PRJNA400391_S_NODE_5514_length_168_cov_3.488722_g5453_i0 PRJNA400391 5514 168 3.488722 5.86105296 Rhodine 880396 Annelida Annelida 106 1.07e-18   NTclustered gi|1402371266|dbj|LC366014.1| 2066647 g5453 i0 83.065 8.57142857142857 124 14 73 4 47 168 151 269 Rhodine sp. 1 GK-2017 GK134 gene for 28S ribosomal RNA, partial sequence blastn 1440 106 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta   Maldanidae Rhodine Rhodine sp. 1 GK-2017

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;