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contig_metadata

10 rows where bioproject = "PRJNA400391", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 10 ✖

tax_clade 1

  • delta/epsilon subdivisions · 10 ✖

bioproject 1

  • PRJNA400391 · 10 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2356449 2356449 PRJNA400391_S_NODE_2362_length_259_cov_251.781250_g2301_i0 PRJNA400391 2362 259 251.78125 652.1134375 Bacteria 2 Bacteria Bacteria 429 9.329999999999999e-116   NTclustered gi|927353967|gb|KT322501.1| 34034 g2301 i0 96.525 99.980694980695 259 9 100 0 1 259 285 27 Uncultured delta proteobacterium clone TGR_WLFZ-321 16S ribosomal RNA gene, partial sequence blastn 25895 429 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
3631914 3631914 PRJNA400391_S_NODE_883_length_368_cov_138.438438_g822_i0 PRJNA400391 883 368 138.438438 509.45345184 Myxococcota 2818505 Bacteria Bacteria 651 0   NTclustered gi|146429756|gb|EF220572.1| 34034 g822 i0 99.169 101.83152173913 361 3 98 0 8 368 10 370 Uncultured delta proteobacterium clone FI-1M_B12 16S ribosomal RNA gene, partial sequence blastn 37474 656 0.992378048780488 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
4909074 4909074 PRJNA400391_S_NODE_884_length_368_cov_134.714715_g823_i0 PRJNA400391 884 368 134.714715 495.7501512 Bacteria 2 Bacteria Bacteria 621 2.12e-173   NTclustered gi|451917577|gb|KC451441.1| 34034 g823 i0 97.778 96.070652173913 360 8 98 0 9 368 1 360 Uncultured delta proteobacterium clone RLBp5719 16S ribosomal RNA gene, partial sequence blastn 35354 623 0.996789727126806 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
6184132 6184132 PRJNA400391_S_NODE_3705_length_209_cov_4.695402_g3644_i0 PRJNA400391 3705 209 4.695402 9.81339018 root 1 Root_unresolved Root_unresolved 387 4.42e-103   NTclustered gi|219960833|gb|FJ568373.1| 34034 g3644 i0 100 99.9904306220096 209 0 100 0 1 209 180 388 Uncultured delta proteobacterium clone A19YC02RM small subunit ribosomal RNA gene, partial sequence blastn 20898 387 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
7458960 7458960 PRJNA400391_S_NODE_2706_length_243_cov_58.057692_g2645_i0 PRJNA400391 2706 243 58.057692 141.08019156 Pseudomonadati 3379134 Bacteria Bacteria 449 6.65e-122   NTclustered gi|194305077|emb|CU466773.1| 34034 g2645 i0 100 97.1646090534979 243 0 100 0 1 243 712 470 Environmental 16s rDNA sequence from Evry wastewater treatment plant anoxic basin blastn 23611 449 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
7458973 7458973 PRJNA400391_S_NODE_3486_length_215_cov_4.511111_g3425_i0 PRJNA400391 3486 215 4.511111 9.69888865 Bacteria 2 Bacteria Bacteria 224 3.8e-54   NTclustered gi|374854163|dbj|AP011765.1| 34034 g3425 i0 86.111 192.33488372093 216 21 98 8 1 211 12366 12155 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 41352 224 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
8733889 8733889 PRJNA400391_S_NODE_5887_length_161_cov_207.920635_g5826_i0 PRJNA400391 5887 161 207.920635 334.75222235 Bacteria 2 Bacteria Bacteria 287 3.37e-73   NTclustered gi|295790297|gb|GQ893119.1| 34034 g5826 i0 98.758 100 161 2 100 0 1 161 164 324 Uncultured delta proteobacterium clone T3-0B_D07 16S ribosomal RNA gene, partial sequence blastn 16100 287 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
10009090 10009090 PRJNA400391_S_NODE_2248_length_266_cov_25.090909_g2187_i0 PRJNA400391 2248 266 25.090909 66.74181794 Bacteria 2 Bacteria Bacteria 418 2.0799999999999995e-112   NTclustered gi|339646553|gb|JN038942.1| 34034 g2187 i0 96.094 113.714285714286 256 10 96 0 4 259 256 1 Uncultured delta proteobacterium clone M-B221 16S ribosomal RNA gene, partial sequence blastn 30248 418 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
20207232 20207232 PRJNA400391_S_NODE_3976_length_202_cov_3.514970_g3915_i0 PRJNA400391 3976 202 3.51497 7.1002394 Thermodesulfobacteriota 200940 Bacteria Bacteria 322 1.21e-83   NTclustered gi|38373451|gb|AY455847.1| 34034 g3915 i0 95.545 97.0049504950495 202 8 100 1 1 202 441 241 Uncultured delta proteobacterium clone AL19 16S ribosomal RNA gene, partial sequence blastn 19595 322 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
25307148 25307148 PRJNA400391_S_NODE_1040_length_353_cov_128.685535_g979_i0 PRJNA400391 1040 353 128.685535 454.25993855 Bacteria 2 Bacteria Bacteria 529 1.2599999999999996e-145   NTclustered gi|927354279|gb|KT322813.1| 34034 g979 i0 95.758 95.0793201133145 330 11 93 2 26 352 1 330 Uncultured delta proteobacterium clone TGR_WLFZ-633 16S ribosomal RNA gene, partial sequence blastn 33563 531 0.99623352165725 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;