RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA400391", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA400391 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1081085 1081085 PRJNA400391_S_NODE_3461_length_216_cov_6.806630_g3400_i0 PRJNA400391 3461 216 6.80663 14.7023208 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 268 1.74e-67   NTclustered gi|2866450392|gb|PQ722881.1| 35084 g3400 i0 91.414 90.0555555555556 198 14 92 3 18 215 590 784 Babesia sp. isolate YN-4 WX-T-165 small subunit ribosomal RNA gene, partial sequence blastn 19452 270 0.992592592592593 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia sp.
2964860 2964860 PRJNA400391_S_NODE_5903_length_161_cov_10.309524_g5842_i0 PRJNA400391 5903 161 10.309524 16.59833364 uncultured Eimeriidae 404735 SAR_Eukaryotes SAR_Eukaryotes 270 3.389999999999999e-68   NTclustered gi|166084133|gb|EF024656.1| 404735 g5842 i0 96.951 38.3788819875776 164 0 100 5 1 161 1005 1166 Eimeriidae environmental sample clone Elev_18S_983 18S ribosomal RNA gene, partial sequence blastn 6179 270 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae   uncultured Eimeriidae
4909068 4909068 PRJNA400391_S_NODE_6504_length_152_cov_55.632479_g6443_i0 PRJNA400391 6504 152 55.632479 84.56136808 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 270 3.15e-68   NTclustered gi|2866450392|gb|PQ722881.1| 35084 g6443 i0 98.684 100 152 2 100 0 1 152 1017 866 Babesia sp. isolate YN-4 WX-T-165 small subunit ribosomal RNA gene, partial sequence blastn 15200 270 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia sp.
6791858 6791858 PRJNA400391_S_NODE_606_length_423_cov_2.708763_g546_i0 PRJNA400391 606 423 2.708763 11.45806749 Urospora travisiae 1852270 SAR_Eukaryotes SAR_Eukaryotes 86.1 4.02e-12   NTclustered gi|2574881052|gb|OR529006.1| 1852270 g546 i0 81.081 7.18439716312057 111 17 26 4 142 250 1279 1387 Urospora travisiae isolate WSBS large subunit ribosomal RNA gene, partial sequence blastn 3039 86.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Urosporidae Urospora Urospora travisiae
8733879 8733879 PRJNA400391_S_NODE_4987_length_177_cov_11.007042_g4926_i0 PRJNA400391 4987 177 11.007042 19.48246434 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 75 3.19e-9   NTclustered gi|1272609464|gb|KY882319.1| 83999 g4926 i0 97.674 25.1242937853107 43 1 46 0 133 175 345 387 Cryptosporidium serpentis isolate HR226 28S ribosomal RNA gene, partial sequence blastn 4447 75 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium serpentis
11892888 11892888 PRJNA400391_S_NODE_3710_length_209_cov_2.109195_g3649_i0 PRJNA400391 3710 209 2.109195 4.40821755 Eimeria sp. 1729940 SAR_Eukaryotes SAR_Eukaryotes 139 1.37e-28   NTclustered gi|1828185818|dbj|LC507802.1| 1729940 g3649 i0 89.381 45.1387559808612 113 8 53 3 37 147 152 262 Eimeria sp. I-457 gene for 28S rRNA, partial sequence blastn 9434 139 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria sp.
16991655 16991655 PRJNA400391_S_NODE_6654_length_150_cov_3.017391_g6593_i0 PRJNA400391 6654 150 3.017391 4.5260865 Nematopsis temporariae 1851121 SAR_Eukaryotes SAR_Eukaryotes 62.1 2.03e-5   NTclustered gi|1031599702|gb|KT717636.1| 1851121 g6593 i0 94.872 0.26 39 2 26 0 21 59 2028 2066 Nematopsis temporariae isolate Rt_E2_E3 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 39 62.1 1 Eukaryota Sar   Apicomplexa Conoidasida     Nematopsis Nematopsis temporariae
25307211 25307211 PRJNA400391_S_NODE_5220_length_173_cov_2.173913_g5159_i0 PRJNA400391 5220 173 2.173913 3.76086949 Cryptosporidium 5806 SAR_Eukaryotes SAR_Eukaryotes 69.4 1.44e-7   NTclustered gi|1272609486|gb|KY882341.1| 1529606 g5159 i0 92.157 27.5953757225434 51 1 28 3 124 172 331 380 Cryptosporidium sp. deer genotype isolate UY3518 28S ribosomal RNA gene, partial sequence blastn 4774 69.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium sp. deer genotype

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;