RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA400391" and tax_clade = "Provora"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Provora · 3 ✖

bioproject 1

  • PRJNA400391 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4241215 4241215 PRJNA400391_S_NODE_6244_length_156_cov_20.165289_g6183_i0 PRJNA400391 6244 156 20.165289 31.45785084 Ancoracysta twista 2044563 Nebulidia other_Eukaryota 150 4.429999999999999e-32   NTclustered gi|1280963087|gb|MG202010.1| 2044563 g6183 i0 84.375 99.6858974358974 160 18 100 6 1 156 5254 5410 Ancoracysta twista strain TD-1 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 15551 150 1 Eukaryota Provora   Nebulidia Nebulidea Nebulidida Nebulidae Ancoracysta Ancoracysta twista
10618023 10618023 PRJNA400391_S_NODE_5129_length_174_cov_6.964029_g5068_i0 PRJNA400391 5129 174 6.964029 12.11741046 Ancoracysta twista 2044563 Nebulidia other_Eukaryota 73.1 1.12e-8   NTclustered gi|1280963087|gb|MG202010.1| 2044563 g5068 i0 100 20.6379310344828 39 0 22 0 1 39 7049 7087 Ancoracysta twista strain TD-1 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 3591 73.1 1 Eukaryota Provora   Nebulidia Nebulidea Nebulidida Nebulidae Ancoracysta Ancoracysta twista
11892886 11892886 PRJNA400391_S_NODE_3670_length_210_cov_7.497143_g3609_i0 PRJNA400391 3670 210 7.497143 15.7440003 Ancoracysta twista 2044563 Nebulidia other_Eukaryota 73.1 1.41e-8   NTclustered gi|1280963087|gb|MG202010.1| 2044563 g3609 i0 100 17.1 39 0 19 0 172 210 7087 7049 Ancoracysta twista strain TD-1 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 3591 73.1 1 Eukaryota Provora   Nebulidia Nebulidea Nebulidida Nebulidae Ancoracysta Ancoracysta twista

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;