RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA400391", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA400391 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13834561 13834561 PRJNA400391_S_NODE_5451_length_169_cov_5.134328_g5390_i0 PRJNA400391 5451 169 5.134328 8.67701432 Bacteria 2 Bacteria Bacteria 134 4.9000000000000005e-27   NTclustered gi|2126063867|gb|CP085689.1| 2886196 g5390 i0 84.672 80.6745562130178 137 17 80 4 11 145 2384011 2384145 Lentisphaerae bacterium WC36 chromosome, complete genome blastn 13634 134 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium WC36
14442955 14442955 PRJNA400391_S_NODE_1732_length_296_cov_1.793103_g1671_i0 PRJNA400391 1732 296 1.793103 5.30758488 Lentisphaera profundi 1658616 Bacteria Bacteria 296 1.15e-75   NTclustered gi|2445967839|gb|CP117812.1| 1658616 g1671 i0 85 139.766891891892 300 36 99 9 2 296 2074775 2074480 Lentisphaera profundi strain SAORIC-696 chromosome 2, complete sequence blastn 41371 296 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaerales Lentisphaeraceae Lentisphaera Lentisphaera profundi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;