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contig_metadata

16 rows where bioproject = "PRJNA400391", tax_clade = "Opisthokonta" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 16 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 16 ✖

bioproject 1

  • PRJNA400391 · 16 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1688893 1688893 PRJNA400391_S_NODE_3482_length_215_cov_11.994444_g3421_i0 PRJNA400391 3482 215 11.994444 25.7880546 Brachionus urceolaris 204736 Rotifera other_Eukaryota 348 2.16e-91   NTclustered gi|72153738|gb|DQ089740.1| 204736 g3421 i0 95.814 100.883720930233 215 9 100 0 1 215 2526 2312 Brachionus urceolaris 28S ribosomal RNA gene, partial sequence blastn 21690 348 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus urceolaris
1688936 1688936 PRJNA400391_S_NODE_5322_length_171_cov_4.992647_g5261_i0 PRJNA400391 5322 171 4.992647 8.53742637 Polyarthra remata 360693 Rotifera other_Eukaryota 255 1.02e-63   NTclustered gi|83285205|gb|DQ297752.1| 360693 g5261 i0 95.062 43.9707602339181 162 8 95 0 2 163 590 751 Polyarthra remata 28S ribosomal RNA gene, partial sequence blastn 7519 255 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Synchaetidae Polyarthra Polyarthra remata
6791792 6791792 PRJNA400391_S_NODE_3166_length_226_cov_2.659686_g3105_i0 PRJNA400391 3166 226 2.659686 6.01089036 Polyarthra remata 360693 Rotifera other_Eukaryota 348 2.2900000000000005e-91   NTclustered gi|83285205|gb|DQ297752.1| 360693 g3105 i0 94.323 83.8185840707965 229 10 100 1 1 226 8 236 Polyarthra remata 28S ribosomal RNA gene, partial sequence blastn 18943 348 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Synchaetidae Polyarthra Polyarthra remata
8067361 8067361 PRJNA400391_S_NODE_1927_length_284_cov_4.449799_g1866_i0 PRJNA400391 1927 284 4.449799 12.63742916 Asplanchna sieboldii 84397 Rotifera other_Eukaryota 311 3.92e-80   NTclustered gi|61200811|gb|AY829085.1| 84397 g1866 i0 86.505 47.9612676056338 289 31 100 6 1 284 2095 1810 Asplanchna sieboldi 28S ribosomal RNA gene, partial sequence blastn 13621 311 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sieboldii
9342203 9342203 PRJNA400391_S_NODE_1908_length_285_cov_4.980000_g1847_i0 PRJNA400391 1908 285 4.98 14.193 Brachionus patulus 160652 Rotifera other_Eukaryota 313 1.09e-80   NTclustered gi|61200806|gb|AY829084.1| 160652 g1847 i0 86.505 45.8245614035088 289 34 100 5 1 285 2096 1809 Brachionus patulus 28S ribosomal RNA gene, partial sequence blastn 13060 313 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus patulus
9342294 9342294 PRJNA400391_S_NODE_5968_length_160_cov_10.192000_g5907_i0 PRJNA400391 5968 160 10.192 16.3072 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 267 4.35e-67   NTclustered gi|229609474|gb|FJ937584.1| 104777 g5907 i0 96.875 100 160 4 100 1 1 160 466 308 Brachionus calyciflorus voucher AHNU-Rotifer-W-ITS-T4 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 16000 267 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
10009094 10009094 PRJNA400391_S_NODE_2368_length_259_cov_25.946429_g2307_i0 PRJNA400391 2368 259 25.946429 67.20125111 Ploima 84394 Rotifera other_Eukaryota 357 4.46e-94   NTclustered gi|83285079|gb|DQ297691.1| 360655 g2307 i0 93.443 92.4015444015444 244 10 94 5 16 259 65 302 Ascomorpha ovalis 18S ribosomal RNA gene, partial sequence blastn 23932 357 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Gastropidae Ascomorpha Ascomorpha ovalis
11284359 11284359 PRJNA400391_S_NODE_5909_length_161_cov_4.000000_g5848_i0 PRJNA400391 5909 161 4 6.44 Ploima 84394 Rotifera other_Eukaryota 254 3.42e-63   NTclustered gi|37788190|gb|AY218143.1| 231620 g5848 i0 95.031 84.7453416149068 161 8 100 0 1 161 180 20 Euchlanis dilatata 28S ribosomal RNA gene, partial sequence blastn 13644 254 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Euchlanis Euchlanis dilatata
13167799 13167799 PRJNA400391_S_NODE_1671_length_299_cov_2.909091_g1610_i0 PRJNA400391 1671 299 2.909091 8.69818209 Brachionus urceolaris 204736 Rotifera other_Eukaryota 342 1.4699999999999999e-89   NTclustered gi|72153738|gb|DQ089740.1| 204736 g1610 i0 88.542 69.5451505016722 288 25 94 5 1 282 32 317 Brachionus urceolaris 28S ribosomal RNA gene, partial sequence blastn 20794 342 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus urceolaris
15716746 15716746 PRJNA400391_S_NODE_2313_length_263_cov_4.614035_g2252_i0 PRJNA400391 2313 263 4.614035 12.13491205 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 322 1.66e-83   NTclustered gi|478683563|gb|KC193096.1| 104777 g2252 i0 88.722 87.2851711026616 266 26 100 4 1 263 295 31 Brachionus calyciflorus 28S ribosomal RNA gene, partial sequence blastn 22956 322 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
15716842 15716842 PRJNA400391_S_NODE_6193_length_157_cov_2.762295_g6132_i0 PRJNA400391 6193 157 2.762295 4.33680315 Asplanchna sieboldii 84397 Rotifera other_Eukaryota 182 1.58e-41   NTclustered gi|61200811|gb|AY829085.1| 84397 g6132 i0 87.421 11.1210191082803 159 18 100 2 1 157 1143 1301 Asplanchna sieboldi 28S ribosomal RNA gene, partial sequence blastn 1746 182 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sieboldii
16383408 16383408 PRJNA400391_S_NODE_1833_length_290_cov_2.117647_g1772_i0 PRJNA400391 1833 290 2.117647 6.1411763 Philodinavus 468647 Rotifera other_Eukaryota 342 1.4199999999999997e-89   NTclustered gi|281323388|gb|GQ922293.1| 317506 g1772 i0 87.973 97.1379310344828 291 33 100 2 1 290 408 119 Uncultured bdelloid rotifer clone Rot_H_08D 18S ribosomal RNA gene, partial sequence blastn 28170 342 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria       Bdelloidea environmental sample
23366160 23366160 PRJNA400391_S_NODE_3919_length_203_cov_10.071429_g3858_i0 PRJNA400391 3919 203 10.071429 20.44500087 Asplanchna sieboldii 84397 Rotifera other_Eukaryota 342 9.369999999999999e-90   NTclustered gi|61200811|gb|AY829085.1| 84397 g3858 i0 97.5 19.8374384236453 200 5 99 0 4 203 1727 1528 Asplanchna sieboldi 28S ribosomal RNA gene, partial sequence blastn 4027 342 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sieboldii
23366163 23366163 PRJNA400391_S_NODE_4159_length_197_cov_4.364198_g4098_i0 PRJNA400391 4159 197 4.364198 8.59747006 Polyarthra remata 360693 Rotifera other_Eukaryota 292 9.23e-75   NTclustered gi|83285205|gb|DQ297752.1| 360693 g4098 i0 93.434 84.3908629441624 198 12 100 1 1 197 482 285 Polyarthra remata 28S ribosomal RNA gene, partial sequence blastn 16625 292 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Synchaetidae Polyarthra Polyarthra remata
24640424 24640424 PRJNA400391_S_NODE_2240_length_267_cov_3.099138_g2179_i0 PRJNA400391 2240 267 3.099138 8.27469846 Brachionus urceolaris 204736 Rotifera other_Eukaryota 318 2.18e-82   NTclustered gi|72153738|gb|DQ089740.1| 204736 g2179 i0 88.235 49.7078651685393 272 25 100 5 1 267 1823 2092 Brachionus urceolaris 28S ribosomal RNA gene, partial sequence blastn 13272 318 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus urceolaris
24640512 24640512 PRJNA400391_S_NODE_6120_length_158_cov_2.536585_g6059_i0 PRJNA400391 6120 158 2.536585 4.0078043 Rotaria rotatoria 231624 Rotifera other_Eukaryota 276 7.120000000000001e-70   NTclustered gi|72153762|gb|DQ089743.1| 231624 g6059 i0 98.101 12.974683544303801 158 3 100 0 1 158 2587 2430 Rotaria rotatoria 28S ribosomal RNA gene, partial sequence blastn 2050 276 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria rotatoria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;