RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA400391", tax_clade = "Haptista" and tax_phylum = "Haptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Haptophyta · 1 ✖

tax_clade 1

  • Haptista · 1 ✖

bioproject 1

  • PRJNA400391 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2964878 2964878 PRJNA400391_S_NODE_823_length_378_cov_8.793003_g762_i0 PRJNA400391 823 378 8.793003 33.23755134 Haptophyta environmental samples 171259 Haptophyta other_Eukaryota 150 1.2399999999999998e-31   NTclustered gi|194146360|gb|EU616327.1| 171259 g762 i0 85.135 39.015873015873 148 21 39 1 1 148 740 594 Uncultured haptophyte clone MV5_19_190 28S ribosomal RNA gene, partial sequence blastn 14748 150 1 Eukaryota Haptista   Haptophyta         Haptophyta environmental samples

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;