RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA400391", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA400391 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2964880 2964880 PRJNA400391_S_NODE_863_length_372_cov_1.887240_g802_i0 PRJNA400391 863 372 1.88724 7.0205328 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 627 4.6199999999999986e-175   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g802 i0 97.043 426.182795698925 372 11 100 0 1 372 806463 806834 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 158540 627 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
8067457 8067457 PRJNA400391_S_NODE_767_length_388_cov_143.841360_g707_i0 PRJNA400391 767 388 143.84136 558.1044768 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 612 1.36e-170   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g707 i0 97.746 88.0876288659794 355 8 91 0 34 388 3828056 3828410 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 34178 612 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
10617963 10617963 PRJNA400391_S_NODE_2989_length_233_cov_1.893939_g2928_i0 PRJNA400391 2989 233 1.893939 4.41287787 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 420 4.96e-113   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g2928 i0 99.142 55.3690987124464 233 2 100 0 1 233 806224 806456 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 12901 420 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
15716849 15716849 PRJNA400391_S_NODE_6573_length_151_cov_4.991379_g6512_i0 PRJNA400391 6573 151 4.991379 7.53698229 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 257 2.43e-64   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g6512 i0 97.351 160.887417218543 151 4 100 0 1 151 805435 805285 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 24294 257 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;