RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA400391", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA400391 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6791863 6791863 PRJNA400391_S_NODE_6226_length_157_cov_1.311475_g6165_i0 PRJNA400391 6226 157 1.311475 2.05901575 Chlorobiota bacterium 2268192 Bacteria Bacteria 213 5.62e-51   NTclustered gi|1958119998|gb|CP065014.1| 2268192 g6165 i0 96.183 11.2547770700637 131 4 83 1 1 130 281598 281728 MAG: Chlorobiota bacterium isolate Ribe_18-Q3-R11-54_MAXAC.096_cln chromosome, complete genome blastn 1767 213 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
22090532 22090532 PRJNA400391_S_NODE_3918_length_203_cov_12.261905_g3857_i0 PRJNA400391 3918 203 12.261905 24.89166715 uncultured Chlorobiota bacterium 156405 Bacteria Bacteria 351 1.56e-92   NTclustered gi|77403655|dbj|AB161089.1| 156405 g3857 i0 98.02 99.0443349753695 202 4 99 0 2 203 181 382 Uncultured Chlorobi bacterium gene for 16S ribosomal RNA, partial sequence, clone:3D9 blastn 20106 351 1 Bacteria FCB group Pseudomonadati Chlorobiota         uncultured Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;