RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA400391" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 12 ✖

bioproject 1

  • PRJNA400391 · 12 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2964801 2964801 PRJNA400391_S_NODE_2743_length_242_cov_3.768116_g2682_i0 PRJNA400391 2743 242 3.768116 9.11884072 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 409 1.12e-109   NTclustered gi|300078503|gb|GU001165.1| 238746 g2682 i0 97.854 26.9710743801653 233 5 96 0 10 242 4432 4200 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6527 409 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
6791870 6791870 PRJNA400391_S_NODE_666_length_407_cov_35.854839_g606_i0 PRJNA400391 666 407 35.854839 145.92919473 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 163 1.7299999999999998e-35   NTclustered gi|390124887|dbj|AB686267.1| 1122280 g606 i0 83.069 1.37837837837838 189 23 45 9 226 407 3316 3130 Rigifila ramosa gene for large subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 561 163 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa
9342276 9342276 PRJNA400391_S_NODE_5088_length_175_cov_2.035714_g5027_i0 PRJNA400391 5088 175 2.035714 3.5624995 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 246 6.3e-61   NTclustered gi|300078503|gb|GU001165.1| 238746 g5027 i0 92.486 67.3885714285714 173 11 98 2 1 171 1321 1149 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11793 246 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
10617960 10617960 PRJNA400391_S_NODE_2849_length_238_cov_2.709360_g2788_i0 PRJNA400391 2849 238 2.70936 6.4482768 uncultured Micronuclearia 1595896 Root_unresolved Root_unresolved 424 3.93e-114   NTclustered gi|1516250890|gb|MK177607.1| 1595896 g2788 i0 98.739 100.155462184874 238 3 100 0 1 238 58 295 Uncultured Micronuclearia clone DDI50.fa small subunit ribosomal RNA gene, partial sequence blastn 23837 424 1 Eukaryota CRuMs       Rigifilida   Micronuclearia uncultured Micronuclearia
10618049 10618049 PRJNA400391_S_NODE_6309_length_155_cov_4.266667_g6248_i0 PRJNA400391 6309 155 4.266667 6.61333385 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 239 9.11e-59   NTclustered gi|300078503|gb|GU001165.1| 238746 g6248 i0 94.771 104.774193548387 153 8 99 0 3 155 4080 4232 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16240 239 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
13167874 13167874 PRJNA400391_S_NODE_4911_length_179_cov_24.111111_g4850_i0 PRJNA400391 4911 179 24.111111 43.15888869 uncultured Micronuclearia 1595896 Root_unresolved Root_unresolved 292 8.210000000000001e-75   NTclustered gi|1516250890|gb|MK177607.1| 1595896 g4850 i0 96.089 100.385474860335 179 7 100 0 1 179 1080 902 Uncultured Micronuclearia clone DDI50.fa small subunit ribosomal RNA gene, partial sequence blastn 17969 292 1 Eukaryota CRuMs       Rigifilida   Micronuclearia uncultured Micronuclearia
14443068 14443068 PRJNA400391_S_NODE_612_length_422_cov_5.033592_g552_i0 PRJNA400391 612 422 5.033592 21.24175824 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 551 3.2899999999999986e-152   NTclustered gi|300078503|gb|GU001165.1| 238746 g552 i0 90.33 90.5829383886256 424 36 100 5 1 422 2560 2980 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 38226 551 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
18265692 18265692 PRJNA400391_S_NODE_3455_length_216_cov_20.276243_g3394_i0 PRJNA400391 3455 216 20.276243 43.79668488 Diphylleia rotans 190327 Root_unresolved Root_unresolved 134 6.62e-27   NTclustered gi|1200177720|gb|MF039354.1| 190327 g3394 i0 79.111 37.0509259259259 225 24 100 14 1 216 795 1005 Diphylleia rotans isolate D_BOR42 18S ribosomal RNA gene, partial sequence blastn 8003 134 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
18265759 18265759 PRJNA400391_S_NODE_6315_length_155_cov_2.591667_g6254_i0 PRJNA400391 6315 155 2.591667 4.01708385 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 272 8.99e-69   NTclustered gi|300078503|gb|GU001165.1| 238746 g6254 i0 98.693 31.7096774193548 153 2 99 0 3 155 3087 3239 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4915 272 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
19539844 19539844 PRJNA400391_S_NODE_3436_length_217_cov_2.994505_g3375_i0 PRJNA400391 3436 217 2.994505 6.49807585 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 134 6.650000000000001e-27   NTclustered gi|300078503|gb|GU001165.1| 238746 g3375 i0 78.241 20.4331797235023 216 36 96 9 10 217 4432 4220 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4434 134 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
20815763 20815763 PRJNA400391_S_NODE_5337_length_171_cov_2.522059_g5276_i0 PRJNA400391 5337 171 2.522059 4.31272089 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 316 4.6e-82   NTclustered gi|300078503|gb|GU001165.1| 238746 g5276 i0 100 40.7777777777778 171 0 100 0 1 171 2561 2391 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6973 316 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
24640482 24640482 PRJNA400391_S_NODE_4540_length_187_cov_19.453947_g4479_i0 PRJNA400391 4540 187 19.453947 36.37888089 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 340 3.0499999999999998e-89   NTclustered gi|33641921|gb|AY268038.1| 238746 g4479 i0 99.465 100.320855614973 187 1 100 0 1 187 938 1124 Micronuclearia podoventralis small subunit ribosomal RNA gene, partial sequence blastn 18760 340 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;