RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA400391", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Peregrinibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Peregrinibacteriota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA400391 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2964777 2964777 PRJNA400391_S_NODE_183_length_613_cov_17.634948_g136_i0 PRJNA400391 183 613 17.634948 108.10223124 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 784 0   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g136 i0 89.756 901.446982055465 615 59 100 4 1 613 813981 814593 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 552587 784 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
10618043 10618043 PRJNA400391_S_NODE_5849_length_162_cov_2.377953_g5788_i0 PRJNA400391 5849 162 2.377953 3.85228386 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 161 2.15e-35   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g5788 i0 88.148 397.351851851852 135 16 83 0 28 162 814123 813989 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 64371 161 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;