RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA400391", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 5 ✖

tax_clade 1

  • Apusozoa · 5 ✖

bioproject 1

  • PRJNA400391 · 5 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1688906 1688906 PRJNA400391_S_NODE_4122_length_198_cov_9.312883_g4061_i0 PRJNA400391 4122 198 9.312883 18.43950834 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 97.1 7.82e-16   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g4061 i0 100 18.6363636363636 52 0 26 0 1 52 6526 6577 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3690 97.1 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
6791742 6791742 PRJNA400391_S_NODE_1146_length_343_cov_11.025974_g1085_i0 PRJNA400391 1146 343 11.025974 37.81909082 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 156 2.4e-33   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g1085 i0 87.97 33.0262390670554 133 15 38 1 158 289 5310 5178 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11328 156 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
13167857 13167857 PRJNA400391_S_NODE_4031_length_201_cov_3.090361_g3970_i0 PRJNA400391 4031 201 3.090361 6.21162561 uncultured Apusomonadidae 1675541 Root_unresolved Root_unresolved 302 1.5700000000000001e-77   NTclustered gi|1110843319|gb|KY077732.1| 1675541 g3970 i0 94 89.4925373134328 200 11 99 1 2 201 1339 1141 Uncultured Apusomonadidae clone Apu_SR-23 18S ribosomal RNA gene, partial sequence blastn 17988 302 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae   uncultured Apusomonadidae
18265716 18265716 PRJNA400391_S_NODE_4395_length_191_cov_1.179487_g4334_i0 PRJNA400391 4395 191 1.179487 2.25282017 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 283 5.35e-72   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g4334 i0 94.149 6.03141361256545 188 7 98 2 1 188 5155 4972 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1152 283 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
18265724 18265724 PRJNA400391_S_NODE_4735_length_183_cov_3.229730_g4674_i0 PRJNA400391 4735 183 3.22973 5.9104059 Singekia montserratensis 2925341 Root_unresolved Root_unresolved 111 2.54e-20   NTclustered gi|2206682174|gb|OM966647.1| 2925341 g4674 i0 92.308 0.426229508196721 78 6 43 0 106 183 122 45 Singekia montserratensis strain MONTSE19P8 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 78 111 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Singekia Singekia montserratensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;