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contig_metadata

15 rows where bioproject = "PRJNA400391", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 15 ✖

tax_clade 1

  • Amoebozoa · 15 ✖

bioproject 1

  • PRJNA400391 · 15 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3631887 3631887 PRJNA400391_S_NODE_5243_length_172_cov_12.729927_g5182_i0 PRJNA400391 5243 172 12.729927 21.89547444 Hartmannellidae 5776 Tubulinea other_Eukaryota 316 4.629999999999998e-82   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g5182 i0 100 96.9476744186046 171 0 99 0 1 171 174 4 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 16675 318 0.993710691823899 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
3631894 3631894 PRJNA400391_S_NODE_5503_length_168_cov_15.458647_g5442_i0 PRJNA400391 5503 168 15.458647 25.97052696 Hartmannellidae 5776 Tubulinea other_Eukaryota 307 2.73e-79   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g5442 i0 100 98.3571428571429 166 0 99 0 3 168 1215 1050 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 16524 307 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
4909001 4909001 PRJNA400391_S_NODE_1384_length_320_cov_5.178947_g1323_i0 PRJNA400391 1384 320 5.178947 16.5726304 Arcellinida 318493 Tubulinea other_Eukaryota 575 1.44e-159   NTclustered gi|166203599|gb|EU392157.1| 499111 g1323 i0 99.065 79.184375 321 2 100 1 1 320 164 484 Heleopera rosea from Switzerland small subunit ribosomal RNA gene, partial sequence blastn 25339 575 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Heleoperidae Heleopera Heleopera rosea
5517863 5517863 PRJNA400391_S_NODE_5085_length_175_cov_2.378571_g5024_i0 PRJNA400391 5085 175 2.378571 4.16249925 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 318 1.32e-82   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g5024 i0 99.429 11.4228571428571 175 1 100 0 1 175 3503 3677 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1999 318 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
6184119 6184119 PRJNA400391_S_NODE_2665_length_245_cov_13.957143_g2604_i0 PRJNA400391 2665 245 13.957143 34.19500035 Hartmannellidae 5776 Tubulinea other_Eukaryota 448 2.41e-121   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g2604 i0 100 97.4326530612245 242 0 99 0 1 242 808 1049 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 23871 448 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
8067407 8067407 PRJNA400391_S_NODE_4167_length_197_cov_2.623457_g4106_i0 PRJNA400391 4167 197 2.623457 5.16821029 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 267 5.599999999999999e-67   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g4106 i0 91.71 0.979695431472081 193 14 97 1 6 196 2944 2752 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 193 267 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
9342290 9342290 PRJNA400391_S_NODE_5788_length_163_cov_2.437500_g5727_i0 PRJNA400391 5788 163 2.4375 3.973125 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 241 2.7000000000000008e-59   NTclustered gi|145386791|gb|EF216916.1| 136459 g5727 i0 93.252 65.5950920245399 163 11 100 0 1 163 333 171 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 10692 241 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
9342310 9342310 PRJNA400391_S_NODE_688_length_402_cov_3.258856_g628_i0 PRJNA400391 688 402 3.258856 13.10060112 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 671 0   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g628 i0 97.015 4.12686567164179 402 7 100 3 1 402 3937 4333 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1659 671 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
10009132 10009132 PRJNA400391_S_NODE_4388_length_191_cov_3.083333_g4327_i0 PRJNA400391 4388 191 3.083333 5.88916603 Hartmannellidae 5776 Tubulinea other_Eukaryota 353 4.02e-93   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g4327 i0 100 97.5916230366492 191 0 100 0 1 191 1348 1538 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 18640 353 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
15716754 15716754 PRJNA400391_S_NODE_2693_length_244_cov_3.952153_g2632_i0 PRJNA400391 2693 244 3.952153 9.64325332 Chaos carolinense 160823 Tubulinea other_Eukaryota 298 2.56e-76   NTclustered gi|421976368|gb|JQ519502.1| 160823 g2632 i0 89.496 96.1598360655738 238 21 97 4 4 239 1089 854 Chaos carolinense clone JG10.98 18S ribosomal RNA gene, partial sequence blastn 23463 298 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense
19539869 19539869 PRJNA400391_S_NODE_4516_length_188_cov_3.418301_g4455_i0 PRJNA400391 4516 188 3.418301 6.42640588 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 259 8.84e-65   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g4455 i0 91.489 1.31914893617021 188 16 100 0 1 188 4503 4690 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 248 259 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
22090572 22090572 PRJNA400391_S_NODE_5338_length_171_cov_2.463235_g5277_i0 PRJNA400391 5338 171 2.463235 4.21213185 Polychaos sp. OK-2023a 3107887 Tubulinea other_Eukaryota 250 4.73e-62   NTclustered gi|2634048133|gb|OR947210.1| 3107887 g5277 i0 93.976 29.6315789473684 166 9 97 1 2 167 985 821 Polychaos sp. OK-2023a small subunit ribosomal RNA gene, partial sequence blastn 5067 250 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Polychaos Polychaos sp. OK-2023a
22090595 22090595 PRJNA400391_S_NODE_658_length_409_cov_5.951872_g598_i0 PRJNA400391 658 409 5.951872 24.34315648 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 739 0   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g598 i0 99.267 75.4572127139364 409 3 100 0 1 409 2675 2267 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 30862 739 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
23366166 23366166 PRJNA400391_S_NODE_4239_length_195_cov_6.337500_g4178_i0 PRJNA400391 4239 195 6.3375 12.358125 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 344 2.48e-90   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g4178 i0 98.462 17.2564102564103 195 3 100 0 1 195 3083 3277 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3365 344 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
23366193 23366193 PRJNA400391_S_NODE_5739_length_164_cov_2.015504_g5678_i0 PRJNA400391 5739 164 2.015504 3.30542656 Polychaos centronucleolus 2762048 Tubulinea other_Eukaryota 257 2.7e-64   NTclustered gi|1887703455|gb|MT874850.1| 2762048 g5678 i0 98.621 4.23780487804878 145 2 88 0 20 164 115 259 Polychaos centronucleolus strain DKis1.1 small subunit ribosomal RNA gene, partial sequence blastn 695 257 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Polychaos Polychaos centronucleolus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;