RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA400391", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 9 ✖

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA400391 · 9 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2356477 2356477 PRJNA400391_S_NODE_4562_length_187_cov_1.921053_g4501_i0 PRJNA400391 4562 187 1.921053 3.59236911 Entamoeba 5758 Evosea other_Eukaryota 346 6.56e-91   NTclustered gi|2202715588|gb|OM900081.1| 715123 g4501 i0 100 100.005347593583 187 0 100 0 1 187 1513 1327 Entamoeba bovis voucher Z0817044-XIX small subunit ribosomal RNA gene, partial sequence blastn 18701 346 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba bovis
4241202 4241202 PRJNA400391_S_NODE_5524_length_168_cov_2.172932_g5463_i0 PRJNA400391 5524 168 2.172932 3.65052576 Didymium spongiosum 289992 Evosea other_Eukaryota 246 6.03e-61   NTclustered gi|2161226356|gb|MZ313554.1| 289992 g5463 i0 93.902 8.22619047619048 164 9 98 1 5 168 7649 7811 Mucilago crustacea 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1382 246 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium spongiosum
12559754 12559754 PRJNA400391_S_NODE_6390_length_154_cov_1.873950_g6329_i0 PRJNA400391 6390 154 1.87395 2.885883 Didymiaceae 1115745 Evosea other_Eukaryota 215 1.52e-51   NTclustered gi|2161226356|gb|MZ313554.1| 289992 g6329 i0 93.75 40.961038961039 144 8 93 1 12 154 5651 5508 Mucilago crustacea 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6308 215 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium spongiosum
13167894 13167894 PRJNA400391_S_NODE_5851_length_162_cov_2.322835_g5790_i0 PRJNA400391 5851 162 2.322835 3.7629927 Protosporangium articulatum 668360 Evosea other_Eukaryota 180 5.93e-41   NTclustered gi|256550197|gb|FJ792705.1| 668360 g5790 i0 86.503 100.771604938272 163 20 100 2 1 162 1221 1060 Protosporangium articulatum small subunit ribosomal RNA gene, partial sequence blastn 16325 180 1 Eukaryota Amoebozoa   Evosea Eumycetozoa   Protosporangiidae Protosporangium Protosporangium articulatum
16991638 16991638 PRJNA400391_S_NODE_5474_length_169_cov_1.865672_g5413_i0 PRJNA400391 5474 169 1.865672 3.15298568 Entamoeba histolytica 5759 Evosea other_Eukaryota 195 2.22e-45   NTclustered gi|467633|emb|Z29969.1| 5759 g5413 i0 93.233 6.3905325443787 133 8 78 1 38 169 2153 2285 E.histolytica plasmid genes for ribosomal RNA and hemolysins HLY1, HLY5mc1 HLY5mc2 HLY4 blastn 1080 195 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
18265673 18265673 PRJNA400391_S_NODE_2695_length_244_cov_2.631579_g2634_i0 PRJNA400391 2695 244 2.631579 6.42105276 Entamoeba bovis 715123 Evosea other_Eukaryota 449 6.68e-122   NTclustered gi|1867180758|gb|MT734186.1| 715123 g2634 i0 100 99.5901639344262 243 0 99 0 2 244 381 139 Entamoeba bovis isolate Aa1.seq small subunit ribosomal RNA gene, partial sequence blastn 24300 449 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba bovis
22758021 22758021 PRJNA400391_S_NODE_6378_length_154_cov_3.327731_g6317_i0 PRJNA400391 6378 154 3.327731 5.12470574 Lamproderma 142788 Evosea other_Eukaryota 279 5.33e-71   NTclustered gi|1478167969|gb|MH930619.1| 142791 g6317 i0 99.351 100.045454545455 154 1 100 0 1 154 261 108 Lamproderma ovoideum isolate MSU8505 small subunit ribosomal RNA gene, partial sequence blastn 15407 279 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Lamproderma Lamproderma ovoideum
23366121 23366121 PRJNA400391_S_NODE_2239_length_267_cov_3.336207_g2178_i0 PRJNA400391 2239 267 3.336207 8.90767269 Entamoeba histolytica 5759 Evosea other_Eukaryota 222 1.76e-53   NTclustered gi|415339|emb|X65163.1| 5759 g2178 i0 81.884 1.46441947565543 276 38 100 9 1 267 6047 6319 E.histolytica rRNA blastn 391 222 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
23366144 23366144 PRJNA400391_S_NODE_3159_length_226_cov_4.806283_g3098_i0 PRJNA400391 3159 226 4.806283 10.86219958 Entamoeba bovis 715123 Evosea other_Eukaryota 412 8.01e-111   NTclustered gi|2202715588|gb|OM900081.1| 715123 g3098 i0 99.558 89.1194690265487 226 1 100 0 1 226 893 668 Entamoeba bovis voucher Z0817044-XIX small subunit ribosomal RNA gene, partial sequence blastn 20141 412 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;