RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA400209" and tax_phylum = "Streptophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA400209 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10009060 10009060 PRJNA400209_P_NODE_1828_length_342_cov_2.303514_g1650_i0 PRJNA400209 1828 342 2.303514 7.87801788 Apiaceae 4037 Plants Plants 189 2.3599999999999993e-43   NTclustered gi|1199744127|gb|MF185182.1| 4039 g1650 i0 100 35.453216374269 102 0 46 0 241 342 5632 5531 Daucus carota cultivar Daucus carota small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12125 189 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Apiales Apiaceae Daucus Daucus carota
12559683 12559683 PRJNA400209_P_NODE_1750_length_351_cov_1.950311_g1572_i0 PRJNA400209 1750 351 1.950311 6.84559161 Apiaceae 4037 Plants Plants 226 1.8499999999999999e-54   NTclustered gi|1199744127|gb|MF185182.1| 4039 g1572 i0 100 53.2393162393162 122 0 54 0 1 122 4447 4568 Daucus carota cultivar Daucus carota small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18687 226 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Apiales Apiaceae Daucus Daucus carota

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;