RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA400171", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA400171 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24640030 24640030 PRJNA400171_S_NODE_1720_length_285_cov_3.167969_g1630_i0 PRJNA400171 1720 285 3.167969 9.02871165 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 215 3.17e-51   NTclustered gi|2814788339|emb|OY761475.2| 2910147 g1630 i0 80.496 1.83508771929825 282 53 99 2 4 284 7110675 7110955 MAG: Vicinamibacterales bacterium isolate 01def6b1-0c8c-435d-859a-076764f3ef92 genome assembly, chromosome: 1 blastn 523 215 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
27138189 27138189 PRJNA400171_S_NODE_4162_length_209_cov_2.533333_g4072_i0 PRJNA400171 4162 209 2.533333 5.29466597 Acidobacteriota bacterium 1978231 Bacteria Bacteria 64.7 4.22e-10   NR RMG44943.1 1978231 g4072 i0 50 2.6555023923445 58 29 83.3 0 207 34 192 249 RMG44943.1 MAG: TM0106 family RecB-like putative nuclease [Acidobacteriota bacterium] diamond 555 64.7 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;