RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA400171", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA400171 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27043809 27043809 PRJNA400171_S_NODE_9102_length_152_cov_2.861789_g9012_i0 PRJNA400171 9102 152 2.861789 4.34991928 Treponema sp. 166 Bacteria Bacteria 43.9 0.00416   NR MDR2477876.1 166 g9012 i0 43.5 0.907894736842105 46 26 90.8 0 2 139 223 268 MDR2477876.1 LysR family transcriptional regulator [Treponema sp.] diamond 138 43.9 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
31577596 31577596 PRJNA400171_S_NODE_4016_length_212_cov_2.475410_g3926_i0 PRJNA400171 4016 212 2.47541 5.2478692 Pseudomonadati 3379134 Bacteria Bacteria 43.1 0.0186   NR MEK6795931.1 2202144 g3926 i0 40 2.0377358490566 70 38 93.4 2 203 6 41 110 MEK6795931.1 TM0106 family RecB-like putative nuclease [Spirochaetota bacterium] diamond 432 43.5 0.990804597701149 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;