RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA399711" and tax_phylum = "Peploviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Peploviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA399711 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25624475 25624475 PRJNA399711_S_NODE_102305_length_153_cov_5242.465517_g102163_i0 PRJNA399711 102305 153 5242.465517 8020.97224101 root 1 Root_unresolved Root_unresolved 230 5.39e-56   NTclustered gi|671698184|gb|KM192300.1| 10359 g102163 i0 93.548 103.333333333333 155 8 100 1 1 153 39027 39181 Human herpesvirus 5 strain Merlin isolate RCMV1528, complete genome blastn 15810 230 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Cytomegalovirus Cytomegalovirus humanbeta5
25624784 25624784 PRJNA399711_S_NODE_81681_length_166_cov_2116.488372_g81539_i0 PRJNA399711 81681 166 2116.488372 3513.37069752 root 1 Root_unresolved Root_unresolved 193 7.85e-45   NTclustered gi|671698184|gb|KM192300.1| 10359 g81539 i0 90.196 94.0120481927711 153 7 87 5 20 164 39022 39174 Human herpesvirus 5 strain Merlin isolate RCMV1528, complete genome blastn 15606 193 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Cytomegalovirus Cytomegalovirus humanbeta5
26169116 26169116 PRJNA399711_S_NODE_50245_length_198_cov_2435.180124_g50103_i0 PRJNA399711 50245 198 2435.180124 4821.65664552 root 1 Root_unresolved Root_unresolved 56.5 0.001   NTclustered gi|2051243208|gb|MZ054335.1| 10390 g50103 i0 100 15.2525252525253 30 0 15 0 126 155 134508 134537 Mutant Gallid alphaherpesvirus 2 isolate RB-1B, complete genome blastn 3020 56.5 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Mardivirus Mardivirus gallidalpha2
26169172 26169172 PRJNA399711_S_NODE_63317_length_182_cov_922.317241_g63175_i0 PRJNA399711 63317 182 922.317241 1678.61737862 root 1 Root_unresolved Root_unresolved 86.1 1.53e-12   NTclustered gi|671698184|gb|KM192300.1| 10359 g63175 i0 97.959 27.7307692307692 49 1 27 0 117 165 39070 39022 Human herpesvirus 5 strain Merlin isolate RCMV1528, complete genome blastn 5047 86.1 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Cytomegalovirus Cytomegalovirus humanbeta5
26576941 26576941 PRJNA399711_S_NODE_59728_length_186_cov_1392.140940_g59586_i0 PRJNA399711 59728 186 1392.14094 2589.3821484 root 1 Root_unresolved Root_unresolved 263 6.75e-66   NTclustered gi|671698184|gb|KM192300.1| 10359 g59586 i0 96.25 87.741935483871 160 6 86 0 27 186 39022 39181 Human herpesvirus 5 strain Merlin isolate RCMV1528, complete genome blastn 16320 263 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Cytomegalovirus Cytomegalovirus humanbeta5
26577057 26577057 PRJNA399711_S_NODE_85896_length_163_cov_1780.198413_g85754_i0 PRJNA399711 85896 163 1780.198413 2901.72341319 root 1 Root_unresolved Root_unresolved 178 2.1499999999999993e-40   NTclustered gi|671698184|gb|KM192300.1| 10359 g85754 i0 88.889 95.7423312883436 153 6 87 5 3 144 39174 39022 Human herpesvirus 5 strain Merlin isolate RCMV1528, complete genome blastn 15606 178 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Cytomegalovirus Cytomegalovirus humanbeta5

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;