RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA399711", tax_phylum = "Methanobacteriota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Archaea · 4 ✖

tax_phylum 1

  • Methanobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA399711 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25563276 25563276 PRJNA399711_S_NODE_36937_length_222_cov_2.275676_g36795_i0 PRJNA399711 36937 222 2.275676 5.05200072 Methanosphaera sp. ISO3-F5 1452353 Archaea Archaea 52.8 0.02   NTclustered gi|2695672541|gb|CP118754.2| 1452353 g36795 i0 100 0.126126126126126 28 0 13 0 174 201 141713 141740 Methanosphaera sp. ISO3-F5 plasmid pNP174, complete sequence blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. ISO3-F5
26242509 26242509 PRJNA399711_S_NODE_107126_length_151_cov_2.877193_g106984_i0 PRJNA399711 107126 151 2.877193 4.34456143 Halobaculum limi 3031916 Archaea Archaea 52.8 0.012   NTclustered gi|2471356524|gb|CP120468.1| 3031916 g106984 i0 100 0.185430463576159 28 0 19 0 35 62 499995 499968 Halobaculum limi strain YSMS11 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobaculum Halobaculum limi
32934556 32934556 PRJNA399711_S_NODE_11009_length_335_cov_7.932886_g10867_i0 PRJNA399711 11009 335 7.932886 26.5751681 Methanocaldococcus jannaschii 2190 Archaea Archaea 75.1 4.52e-15   NR WP_064496856.1 2190 g10867 i0 76.2 0.564179104477612 63 15 56.4 0 48 236 28 90 WP_064496856.1 hypothetical protein [Methanocaldococcus jannaschii] diamond 189 75.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii
33037457 33037457 PRJNA399711_S_NODE_73372_length_173_cov_3.514706_g73230_i0 PRJNA399711 73372 173 3.514706 6.08044138 Methanobacterium sp. 2164 Archaea Archaea 45.1 0.00222   NR MCC7564369.1 2164 g73230 i0 100 0.416184971098266 24 0 41.6 0 100 171 1 24 MCC7564369.1 hypothetical protein [Methanobacterium sp.] diamond 72 45.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;