RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA399711" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA399711 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25836561 25836561 PRJNA399711_S_NODE_65363_length_180_cov_12.909091_g65221_i0 PRJNA399711 65363 180 12.909091 23.2363638 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 139 1.14e-28   NTclustered gi|575456455|gb|CP007128.1| 861299 g65221 i0 80.899 4.61111111111111 178 32 98 2 1 177 4313661 4313485 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 830 139 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
30012386 30012386 PRJNA399711_P_NODE_7591_length_213_cov_1.545455_g7525_i0 PRJNA399711 7591 213 1.545455 3.29181915 Longimicrobium sp. 2029185 Bacteria Bacteria 99 2.96e-22   NR HEX6909247.1 2029185 g7525 i0 70.4 1 71 20 100 1 213 1 149 218 HEX6909247.1 carboxypeptidase-like regulatory domain-containing protein [Longimicrobium sp.] diamond 213 99 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30675568 30675568 PRJNA399711_P_NODE_14393_length_177_cov_1.107143_g14327_i0 PRJNA399711 14393 177 1.107143 1.95964311 Gemmatimonas sp. 1962908 Bacteria Bacteria 44.3 0.00358   NR HYW32475.1 1962908 g14327 i0 59 0.661016949152542 39 16 66.1 0 125 9 135 173 HYW32475.1 antibiotic biosynthesis monooxygenase [Gemmatimonas sp.] diamond 117 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
32635893 32635893 PRJNA399711_P_NODE_11180_length_190_cov_3.607843_g11114_i0 PRJNA399711 11180 190 3.607843 6.8549017 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 95.1 5.68e-23   NR MEO7359833.1 2026741 g11114 i0 87.8 0.773684210526316 49 6 77.4 0 43 189 1 49 MEO7359833.1 6,7-dimethyl-8-ribityllumazine synthase [Gemmatimonadaceae bacterium] diamond 147 95.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32917621 32917621 PRJNA399711_S_NODE_43177_length_210_cov_3.011561_g43035_i0 PRJNA399711 43177 210 3.011561 6.3242781 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 49.7 6.21e-6   NR HKT08095.1 2026741 g43035 i0 51.4 0.5 35 17 50 0 1 105 31 65 HKT08095.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 105 49.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32969112 32969112 PRJNA399711_S_NODE_30410_length_237_cov_23.555000_g30268_i0 PRJNA399711 30410 237 23.555 55.82535 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 92.4 1.92e-21   NR HYW51047.1 2026741 g30268 i0 85.7 0.708860759493671 56 8 70.9 0 62 229 1 56 HYW51047.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 168 92.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
33003315 33003315 PRJNA399711_S_NODE_69003_length_177_cov_3.007143_g68861_i0 PRJNA399711 69003 177 3.007143 5.32264311 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42 0.0156   NR MDQ3521392.1 2026742 g68861 i0 64.3 0.474576271186441 28 10 47.5 0 86 3 1 28 MDQ3521392.1 hypothetical protein [Gemmatimonadota bacterium] diamond 84 42 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
33139917 33139917 PRJNA399711_S_NODE_96703_length_157_cov_1.725000_g96561_i0 PRJNA399711 96703 157 1.725 2.70825 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 46.6 4.84e-4   NR TFG87251.1 2448054 g96561 i0 44.9 0.936305732484076 49 27 93.6 0 3 149 211 259 TFG87251.1 MAG: hypothetical protein E4H17_03515 [Gemmatimonadales bacterium] diamond 147 46.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;