RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA399711" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA399711 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32934889 32934889 PRJNA399711_S_NODE_57625_length_189_cov_2.907895_g57483_i0 PRJNA399711 57625 189 2.907895 5.49592155 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 62 2.97e-9   NR XP_004333337.1 1257118 g57483 i0 53.8 1.03174603174603 65 22 90.5 1 189 19 578 642 XP_004333337.1 ABC transporter A family protein [Acanthamoeba castellanii str. Neff] diamond 195 62 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32969357 32969357 PRJNA399711_S_NODE_6610_length_393_cov_1.949438_g6468_i0 PRJNA399711 6610 393 1.949438 7.66129134 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 139 1.34e-37   NR XP_004340902.1 1257118 g6468 i0 55.1 1.91603053435115 127 57 96.9 0 2 382 141 267 XP_004340902.1 GNS1/SUR4 family protein [Acanthamoeba castellanii str. Neff] diamond 753 139 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
33020263 33020263 PRJNA399711_S_NODE_57204_length_189_cov_9.256579_g57062_i0 PRJNA399711 57204 189 9.256579 17.49493431 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 45.8 2.59e-4   NR XP_004353541.1 1257118 g57062 i0 48.7 0.619047619047619 39 20 61.9 0 185 69 56 94 XP_004353541.1 uncharacterized protein ACA1_144040 [Acanthamoeba castellanii str. Neff] diamond 117 45.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
33020271 33020271 PRJNA399711_S_NODE_58932_length_187_cov_9.053333_g58790_i0 PRJNA399711 58932 187 9.053333 16.92973271 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 89 5.31e-19   NR XP_004341646.1 1257118 g58790 i0 64.3 1.74866310160428 56 20 89.8 0 184 17 330 385 XP_004341646.1 papain family cysteine protease containing protein [Acanthamoeba castellanii str. Neff] diamond 327 89 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
33054283 33054283 PRJNA399711_S_NODE_38773_length_218_cov_4.801105_g38631_i0 PRJNA399711 38773 218 4.801105 10.4664089 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 43.9 0.00875   NR XP_004353046.1 1257118 g38631 i0 41.8 0.922018348623853 67 34 89.4 2 4 198 100 163 XP_004353046.1 uncharacterized protein ACA1_071400 [Acanthamoeba castellanii str. Neff] diamond 201 43.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
33054411 33054411 PRJNA399711_S_NODE_60405_length_186_cov_2.369128_g60263_i0 PRJNA399711 60405 186 2.369128 4.40657808 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 50.1 4.22e-5   NR XP_004344777.1 1257118 g60263 i0 48.1 0.870967741935484 54 28 87.1 0 186 25 198 251 XP_004344777.1 Hypothetical protein ACA1_281280 [Acanthamoeba castellanii str. Neff] diamond 162 50.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
33088800 33088800 PRJNA399711_S_NODE_94550_length_158_cov_2.826446_g94408_i0 PRJNA399711 94550 158 2.826446 4.46578468 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 58.2 4.22e-8   NR XP_004353733.1 1257118 g94408 i0 51.2 0.778481012658228 41 20 77.8 0 3 125 503 543 XP_004353733.1 Inosine5'-monophosphate dehydrogenase [Acanthamoeba castellanii str. Neff] diamond 123 58.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;