RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA399711" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA399711 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25700390 25700390 PRJNA399711_S_NODE_62194_length_184_cov_2.408163_g62052_i0 PRJNA399711 62194 184 2.408163 4.43101992 Nitzschia traheaformis 1881117 SAR_Eukaryotes SAR_Eukaryotes 279 6.61e-71   NTclustered gi|2199203581|ref|NC_061047.1| 1881117 g62052 i0 94.022 65.6467391304348 184 11 100 0 1 184 41164 41347 Nitzschia traheaformis chloroplast, complete genome blastn 12079 279 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia traheaformis
33071264 33071264 PRJNA399711_S_NODE_39253_length_217_cov_5.683333_g39111_i0 PRJNA399711 39253 217 5.683333 12.33283261 Skeletonema marinoi 267567 SAR_Eukaryotes SAR_Eukaryotes 74.7 1.02e-13   NR KAK1746487.1 267567 g39111 i0 67.3 0.67741935483871 49 16 67.7 0 217 71 297 345 KAK1746487.1 transaldolase [Skeletonema marinoi] diamond 147 74.7 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Skeletonemataceae Skeletonema Skeletonema marinoi
33105298 33105298 PRJNA399711_S_NODE_109966_length_150_cov_1.371681_g109824_i0 PRJNA399711 109966 150 1.371681 2.0575215 Chaetoceros tenuissimus 426638 SAR_Eukaryotes SAR_Eukaryotes 61.2 8.99e-10   NR GFH49172.1 426638 g109824 i0 73.5 1.96 49 13 98 0 2 148 139 187 GFH49172.1 hypothetical protein CTEN210_05648 [Chaetoceros tenuissimus] diamond 294 61.2 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros tenuissimus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;