RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA399711", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA399711 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25896733 25896733 PRJNA399711_S_NODE_60371_length_186_cov_2.550336_g60229_i0 PRJNA399711 60371 186 2.550336 4.74362496 Ureaplasma 2129 Bacteria Bacteria 335 1.4099999999999996e-87   NTclustered gi|1493548740|dbj|AP018561.1| 38504 g60229 i0 99.457 12.5483870967742 184 1 99 0 3 186 118997 118814 Ureaplasma parvum serovar 3 OMC-P162 DNA, complete genome blastn 2334 335 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Ureaplasma Ureaplasma parvum
32969192 32969192 PRJNA399711_S_NODE_40418_length_215_cov_3.005618_g40276_i0 PRJNA399711 40418 215 3.005618 6.4620787 Mycoplasmopsis columbina 114881 Bacteria Bacteria 71.6 1.13e-12   NR WP_006608732.1 114881 g40276 i0 52.9 0.976744186046512 70 32 96.3 1 6 212 74 143 WP_006608732.1 ankyrin repeat domain-containing protein [Mycoplasmopsis columbina] diamond 210 71.6 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis columbina
33003430 33003430 PRJNA399711_S_NODE_90547_length_160_cov_6.853659_g90405_i0 PRJNA399711 90547 160 6.853659 10.9658544 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 46.6 5.3e-4   NR MDV3182576.1 2754999 g90405 i0 95.2 0.39375 21 1 39.4 0 73 11 1 21 MDV3182576.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI [Candidatus Phytoplasma australasiaticum] diamond 63 46.6 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;