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contig_metadata

3 rows where bioproject = "PRJNA399711", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA399711 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26244917 26244917 PRJNA399711_S_NODE_62430_length_184_cov_1.265306_g62288_i0 PRJNA399711 62430 184 1.265306 2.32816304 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.004   NTclustered gi|170285697|emb|CU672270.3| 123356 g62288 i0 100 0.157608695652174 29 0 16 0 55 83 1789 1761 H.parasitica DNA sequence from clone HpEmoy2-20J10, complete sequence blastn 29 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
26245267 26245267 PRJNA399711_S_NODE_71238_length_175_cov_2.710145_g71096_i0 PRJNA399711 71238 175 2.710145 4.74275375 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.004   NTclustered gi|669159437|ref|XM_008617059.1| 1156394 g71096 i0 100 0.325714285714286 29 0 17 0 1 29 519 547 Saprolegnia diclina VS20 hypothetical protein mRNA blastn 57 54.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
33088425 33088425 PRJNA399711_S_NODE_39502_length_217_cov_2.083333_g39360_i0 PRJNA399711 39502 217 2.083333 4.52083261 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 106 1.06e-24   NR KAJ0412831.1 114742 g39360 i0 69.2 3.59447004608295 65 20 89.9 0 2 196 527 591 KAJ0412831.1 hypothetical protein ATCC90586_002461 [Pythium insidiosum] diamond 780 106 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;