contig_metadata
26 rows where bioproject = "PRJNA399711", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4908961 | 4908961 | PRJNA399711_P_NODE_7484_length_213_cov_7.085227_g7418_i0 | PRJNA399711 | 7484 | 213 | 7.085227 | 15.09153351 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 80.5 | 8.6e-11 | NTclustered | gi|177839040|gb|CP001032.1| | 452637 | g7418 | i0 | 95.918 | 22.2441314553991 | 49 | 2 | 23 | 0 | 144 | 192 | 1925587 | 1925635 | Opitutus terrae PB90-1, complete genome | blastn | 4738 | 80.5 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus terrae | |
| 25563042 | 25563042 | PRJNA399711_S_NODE_31713_length_234_cov_3.543147_g31571_i0 | PRJNA399711 | 31713 | 234 | 3.543147 | 8.29096398 | Akkermansia muciniphila | 239935 | Bacteria | Bacteria | 54.7 | 0.006 | NTclustered | gi|1554474302|gb|CP025823.1| | 239935 | g31571 | i0 | 100 | 0.247863247863248 | 29 | 0 | 12 | 0 | 127 | 155 | 410818 | 410790 | Akkermansia muciniphila strain EB-AMDK-7 chromosome, complete genome | blastn | 58 | 54.7 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansia | Akkermansia muciniphila | |
| 26109082 | 26109082 | PRJNA399711_S_NODE_71133_length_175_cov_3.181159_g70991_i0 | PRJNA399711 | 71133 | 175 | 3.181159 | 5.56702825 | uncultured Verrucomicrobiota bacterium | 156588 | Bacteria | Bacteria | 195 | 2.31e-45 | NTclustered | gi|226525339|gb|FJ872375.1| | 156588 | g70991 | i0 | 86.857 | 34.8342857142857 | 175 | 21 | 99 | 2 | 2 | 175 | 28443 | 28616 | Uncultured Verrucomicrobia bacterium clone 286 genomic sequence | blastn | 6096 | 195 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | uncultured Verrucomicrobiota bacterium | |||||
| 26244767 | 26244767 | PRJNA399711_S_NODE_58150_length_188_cov_6.344371_g58008_i0 | PRJNA399711 | 58150 | 188 | 6.344371 | 11.92741748 | uncultured Verrucomicrobiota bacterium | 156588 | Bacteria | Bacteria | 224 | 3.23e-54 | NTclustered | gi|226525288|gb|FJ872373.1| | 156588 | g58008 | i0 | 99.2 | 153.531914893617 | 125 | 0 | 66 | 1 | 1 | 124 | 15369 | 15493 | Uncultured Verrucomicrobia bacterium clone 118 genomic sequence | blastn | 28864 | 224 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | uncultured Verrucomicrobiota bacterium | |||||
| 26379091 | 26379091 | PRJNA399711_S_NODE_23479_length_260_cov_8.349776_g23337_i0 | PRJNA399711 | 23479 | 260 | 8.349776 | 21.7094176 | Opitutia bacterium KCR 482 | 3034326 | Bacteria | Bacteria | 60.2 | 1.42e-4 | NTclustered | gi|2707273910|gb|CP149973.1| | 3034326 | g23337 | i0 | 91.111 | 0.173076923076923 | 45 | 3 | 17 | 1 | 103 | 146 | 2219902 | 2219858 | Opitutia bacterium KCR 482 chromosome, complete genome | blastn | 45 | 60.2 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutia bacterium KCR 482 | ||||
| 27391650 | 27391650 | PRJNA399711_P_NODE_21663_length_155_cov_7.381356_g21597_i0 | PRJNA399711 | 21663 | 155 | 7.381356 | 11.4411018 | Candidatus Udaeobacter sp. | 2665650 | Bacteria | Bacteria | 58.5 | 2.4e-9 | NR | HMF46722.1 | 2665650 | g21597 | i0 | 50 | 1.47096774193548 | 76 | 5 | 83.2 | 1 | 129 | 1 | 1 | 76 | HMF46722.1 thioredoxin [Candidatus Udaeobacter sp.] | diamond | 228 | 58.5 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Chthoniobacterales | Chthoniobacteraceae | Candidatus Udaeobacter | Candidatus Udaeobacter sp. | |
| 28275441 | 28275441 | PRJNA399711_P_NODE_6206_length_226_cov_3.449735_g6140_i0 | PRJNA399711 | 6206 | 226 | 3.449735 | 7.7964011 | Opitutaceae bacterium | 2006848 | Bacteria | Bacteria | 57.4 | 2.07e-7 | NR | HRJ48582.1 | 2006848 | g6140 | i0 | 56.8 | 0.584070796460177 | 44 | 19 | 58.4 | 0 | 132 | 1 | 123 | 166 | HRJ48582.1 hypothetical protein [Opitutaceae bacterium] | diamond | 132 | 57.4 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutaceae bacterium | ||
| 32825069 | 32825069 | PRJNA399711_P_NODE_7360_length_214_cov_9.079096_g7294_i0 | PRJNA399711 | 7360 | 214 | 9.079096 | 19.429265440000002 | Akkermansiaceae bacterium | 2562705 | Bacteria | Bacteria | 134 | 2.48e-37 | NR | MDE0835402.1 | 2562705 | g7294 | i0 | 92.6 | 1.90654205607477 | 68 | 5 | 95.3 | 0 | 209 | 6 | 60 | 127 | MDE0835402.1 hypothetical protein [Akkermansiaceae bacterium] | diamond | 408 | 134 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansiaceae bacterium | ||
| 32924006 | 32924006 | PRJNA399711_S_NODE_12897_length_319_cov_2.631206_g12755_i0 | PRJNA399711 | 12897 | 319 | 2.631206 | 8.39354714 | Bacteria | 2 | Bacteria | Bacteria | 47 | 0.00262 | NR | HWL16345.1 | 1913982 | g12755 | i0 | 33 | 3.87460815047022 | 103 | 59 | 93.1 | 3 | 3 | 299 | 214 | 310 | HWL16345.1 collagen-binding domain-containing protein [Opitutus sp.] | diamond | 1236 | 47 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. | |
| 32934758 | 32934758 | PRJNA399711_S_NODE_37689_length_220_cov_5.245902_g37547_i0 | PRJNA399711 | 37689 | 220 | 5.245902 | 11.5409844 | Akkermansiaceae bacterium | 2562705 | Bacteria | Bacteria | 43.1 | 0.0202 | NR | MDB4470400.1 | 2562705 | g37547 | i0 | 33.3 | 0.818181818181818 | 60 | 34 | 79.1 | 2 | 30 | 203 | 293 | 348 | MDB4470400.1 hypothetical protein [Akkermansiaceae bacterium] | diamond | 180 | 43.1 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansiaceae bacterium | ||
| 32951973 | 32951973 | PRJNA399711_S_NODE_35418_length_225_cov_3.202128_g35276_i0 | PRJNA399711 | 35418 | 225 | 3.202128 | 7.204788 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 99.4 | 3.5e-24 | NR | MEY4484647.1 | 2026799 | g35276 | i0 | 71.9 | 0.853333333333333 | 64 | 18 | 85.3 | 0 | 3 | 194 | 114 | 177 | MEY4484647.1 hypothetical protein [Verrucomicrobiota bacterium] | diamond | 192 | 99.4 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 32969015 | 32969015 | PRJNA399711_S_NODE_15730_length_299_cov_4.034351_g15588_i0 | PRJNA399711 | 15730 | 299 | 4.034351 | 12.06270949 | Verrucomicrobiia bacterium | 2499141 | Bacteria | Bacteria | 105 | 4.78e-24 | NR | HEY5914955.1 | 2499141 | g15588 | i0 | 47.4 | 0.973244147157191 | 97 | 50 | 97.3 | 1 | 3 | 293 | 55 | 150 | HEY5914955.1 PA14 domain-containing protein [Verrucomicrobiia bacterium] | diamond | 291 | 105 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiia bacterium | ||||
| 32969302 | 32969302 | PRJNA399711_S_NODE_56250_length_191_cov_1.474026_g56108_i0 | PRJNA399711 | 56250 | 191 | 1.474026 | 2.81538966 | Chthoniobacterales bacterium | 2201154 | Bacteria | Bacteria | 43.5 | 0.00967 | NR | HMJ06857.1 | 2201154 | g56108 | i0 | 39.6 | 0.832460732984293 | 53 | 32 | 83.2 | 0 | 26 | 184 | 1 | 53 | HMJ06857.1 hypothetical protein [Chthoniobacterales bacterium] | diamond | 159 | 43.5 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Chthoniobacterales | Chthoniobacterales bacterium | |||
| 32969435 | 32969435 | PRJNA399711_S_NODE_80842_length_167_cov_4.430769_g80700_i0 | PRJNA399711 | 80842 | 167 | 4.430769 | 7.39938423 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 97.4 | 8.15e-23 | NR | MEI8037279.1 | 2026799 | g80700 | i0 | 83.6 | 2.96407185628743 | 55 | 9 | 98.8 | 0 | 2 | 166 | 59 | 113 | MEI8037279.1 glucose-1-phosphate thymidylyltransferase RfbA [Verrucomicrobiota bacterium] | diamond | 495 | 97.4 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 32975630 | 32975630 | PRJNA399711_S_NODE_80610_length_167_cov_6.792308_g80468_i0 | PRJNA399711 | 80610 | 167 | 6.792308 | 11.34315436 | Bacteria | 2 | Bacteria | Bacteria | 97.8 | 5.33e-22 | NR | PYJ12048.1 | 2026799 | g80468 | i0 | 92.7 | 6.91616766467066 | 55 | 4 | 98.8 | 0 | 165 | 1 | 109 | 163 | PYJ12048.1 MAG: hypothetical protein DME93_08595 [Verrucomicrobiota bacterium] | diamond | 1155 | 97.8 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 32986296 | 32986296 | PRJNA399711_S_NODE_55555_length_191_cov_11.058442_g55413_i0 | PRJNA399711 | 55555 | 191 | 11.058442 | 21.12162422 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 44.3 | 0.00544 | NR | MBP8258533.1 | 2026799 | g55413 | i0 | 41.2 | 0.801047120418848 | 51 | 27 | 80.1 | 1 | 5 | 157 | 946 | 993 | MBP8258533.1 type 2 lantipeptide synthetase LanM family protein [Verrucomicrobiota bacterium] | diamond | 153 | 44.3 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 33019951 | 33019951 | PRJNA399711_S_NODE_109764_length_150_cov_1.743363_g109622_i0 | PRJNA399711 | 109764 | 150 | 1.743363 | 2.6150445 | Luteolibacter yonseiensis | 1144680 | Bacteria | Bacteria | 88.6 | 6.59e-19 | NR | WP_200350545.1 | 1144680 | g109622 | i0 | 78.7 | 1.88 | 47 | 10 | 94 | 0 | 10 | 150 | 35 | 81 | WP_200350545.1 cryptochrome/photolyase family protein [Luteolibacter yonseiensis] | diamond | 282 | 88.6 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter yonseiensis | |
| 33037543 | 33037543 | PRJNA399711_S_NODE_86396_length_163_cov_4.095238_g86254_i0 | PRJNA399711 | 86396 | 163 | 4.095238 | 6.67523794 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 67.8 | 1.74e-11 | NR | NOS72616.1 | 2026799 | g86254 | i0 | 60 | 0.920245398773006 | 50 | 20 | 92 | 0 | 158 | 9 | 320 | 369 | NOS72616.1 outer membrane beta-barrel protein [Verrucomicrobiota bacterium] | diamond | 150 | 67.8 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 33088254 | 33088254 | PRJNA399711_S_NODE_17406_length_289_cov_4.353175_g17264_i0 | PRJNA399711 | 17406 | 289 | 4.353175 | 12.58067575 | Verrucomicrobiia bacterium | 2499141 | Bacteria | Bacteria | 69.7 | 2.15e-11 | NR | HEY6226941.1 | 2499141 | g17264 | i0 | 65 | 2.95847750865052 | 60 | 20 | 62.3 | 1 | 288 | 109 | 446 | 504 | HEY6226941.1 CARDB domain-containing protein [Verrucomicrobiia bacterium] | diamond | 855 | 69.7 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiia bacterium | ||||
| 33088753 | 33088753 | PRJNA399711_S_NODE_85790_length_164_cov_1.346457_g85648_i0 | PRJNA399711 | 85790 | 164 | 1.346457 | 2.20818948 | Terrimicrobiaceae bacterium | 2832348 | Bacteria | Bacteria | 90.5 | 5.65e-20 | NR | HEY5953652.1 | 2832348 | g85648 | i0 | 94.2 | 5.70731707317073 | 52 | 3 | 95.1 | 0 | 5 | 160 | 179 | 230 | HEY5953652.1 efflux RND transporter permease subunit [Terrimicrobiaceae bacterium] | diamond | 936 | 90.5 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Terrimicrobiia | Terrimicrobiales | Terrimicrobiaceae | Terrimicrobiaceae bacterium | ||
| 33122539 | 33122539 | PRJNA399711_S_NODE_40159_length_215_cov_10.241573_g40017_i0 | PRJNA399711 | 40159 | 215 | 10.241573 | 22.01938195 | Verrucomicrobiia bacterium | 2499141 | Bacteria | Bacteria | 94.4 | 9.8e-21 | NR | HEX3798091.1 | 2499141 | g40017 | i0 | 72.9 | 4.91162790697674 | 70 | 19 | 97.7 | 0 | 1 | 210 | 195 | 264 | HEX3798091.1 multidrug effflux MFS transporter [Verrucomicrobiia bacterium] | diamond | 1056 | 94.4 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiia bacterium | ||||
| 33139635 | 33139635 | PRJNA399711_S_NODE_46047_length_205_cov_3.452381_g45905_i0 | PRJNA399711 | 46047 | 205 | 3.452381 | 7.07738105 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 43.5 | 0.00477 | NR | MEW6156768.1 | 2026799 | g45905 | i0 | 42.2 | 0.658536585365854 | 45 | 26 | 65.9 | 0 | 137 | 3 | 4 | 48 | MEW6156768.1 dATP/dGTP pyrophosphohydrolase domain-containing protein [Verrucomicrobiota bacterium] | diamond | 135 | 43.5 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 33139721 | 33139721 | PRJNA399711_S_NODE_58199_length_188_cov_5.509934_g58057_i0 | PRJNA399711 | 58199 | 188 | 5.509934 | 10.35867592 | Luteolibacter sp. | 1962973 | Bacteria | Bacteria | 59.3 | 2.5e-8 | NR | MFT4175806.1 | 1962973 | g58057 | i0 | 89.3 | 2.26595744680851 | 28 | 3 | 44.7 | 0 | 188 | 105 | 394 | 421 | MFT4175806.1 adenylosuccinate synthase [Luteolibacter sp.] | diamond | 426 | 59.3 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter sp. | |
| 33139891 | 33139891 | PRJNA399711_S_NODE_89695_length_161_cov_2.596774_g89553_i0 | PRJNA399711 | 89695 | 161 | 2.596774 | 4.18080614 | Chthoniobacter sp. | 2510640 | Bacteria | Bacteria | 77.8 | 5.32e-15 | NR | WP_348545423.1 | 2510640 | g89553 | i0 | 68 | 2.83229813664596 | 50 | 16 | 93.2 | 0 | 3 | 152 | 119 | 168 | WP_348545423.1 hypothetical protein [Chthoniobacter sp.] | diamond | 456 | 77.8 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Chthoniobacterales | Chthoniobacteraceae | Chthoniobacter | Chthoniobacter sp. | |
| 33162992 | 33162992 | PRJNA399711_S_NODE_30816_length_236_cov_11.592965_g30674_i0 | PRJNA399711 | 30816 | 236 | 11.592965 | 27.3593974 | Bacteria | 2 | Bacteria | Bacteria | 46.6 | 0.00153 | NR | NNM30568.1 | 2562705 | g30674 | i0 | 54.7 | 4.39830508474576 | 53 | 20 | 66.1 | 2 | 157 | 2 | 1309 | 1358 | NNM30568.1 hypothetical protein [Akkermansiaceae bacterium] | diamond | 1038 | 46.6 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansiaceae bacterium | ||
| 33174119 | 33174119 | PRJNA399711_S_NODE_84072_length_165_cov_2.203125_g83930_i0 | PRJNA399711 | 84072 | 165 | 2.203125 | 3.63515625 | Verrucomicrobia bacterium TMED4 | 1986790 | Bacteria | Bacteria | 41.2 | 0.0445 | NR | OUU12443.1 | 1986790 | g83930 | i0 | 47.5 | 0.727272727272727 | 40 | 19 | 72.7 | 1 | 163 | 44 | 132 | 169 | OUU12443.1 MAG: fructosamine kinase family protein [Verrucomicrobia bacterium TMED40] | diamond | 120 | 41.2 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobia bacterium TMED40 |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;