RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA399711", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA399711 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32917640 32917640 PRJNA399711_S_NODE_45905_length_205_cov_5.071429_g45763_i0 PRJNA399711 45905 205 5.071429 10.39642945 Lentisphaerota bacterium 1932692 Bacteria Bacteria 92.4 9.82e-21   NR MCP4103836.1 1932692 g45763 i0 56.7 0.980487804878049 67 29 98 0 3 203 206 272 MCP4103836.1 hypothetical protein [Lentisphaerota bacterium] diamond 201 92.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
33054006 33054006 PRJNA399711_S_NODE_100197_length_155_cov_1.618644_g100055_i0 PRJNA399711 100197 155 1.618644 2.5088982 Lentisphaeria bacterium 2053569 Bacteria Bacteria 46.6 4.88e-4   NR MBR4956965.1 2053569 g100055 i0 56.8 0.716129032258065 37 13 71.6 1 112 2 16 49 MBR4956965.1 heparinase II/III family protein [Lentisphaeria bacterium] diamond 111 46.6 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;