RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA399711" and tax_clade = "Metamonada"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA399711 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25833934 25833934 PRJNA399711_S_NODE_101211_length_154_cov_3.692308_g101069_i0 PRJNA399711 101211 154 3.692308 5.68615432 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 56.5 0.001   NTclustered gi|2806456362|ref|XM_068492107.1| 1144522 g101069 i0 100 0.194805194805195 30 0 19 0 116 145 836 807 Tritrichomonas foetus phospholipid-translocating P-type ATPase, flippase family protein (TRFO_04795), partial mRNA blastn 30 56.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32917379 32917379 PRJNA399711_S_NODE_109513_length_150_cov_2.283186_g109371_i0 PRJNA399711 109513 150 2.283186 3.424779 Kipferlia bialata 797122 Fornicata other_Eukaryota 60.8 2.53e-9   NR GIQ87610.1 797122 g109371 i0 63.9 2.14 36 13 72 0 148 41 214 249 GIQ87610.1 peptide chain release factor eRF1/aRF1, partial [Kipferlia bialata] diamond 321 61.2 0.993464052287582 Eukaryota Metamonada   Fornicata       Kipferlia Kipferlia bialata
32941288 32941288 PRJNA399711_S_NODE_40953_length_214_cov_2.954802_g40811_i0 PRJNA399711 40953 214 2.954802 6.32327628 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 47.4 9.49e-5   NR XP_068357532.1 1144522 g40811 i0 78.6 4.71028037383178 28 6 39.3 0 3 86 71 98 XP_068357532.1 40S ribosomal protein S23 [Tritrichomonas foetus] diamond 1008 47.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;