RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA399133", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 9 ✖

tax_phylum 1

  • Myxococcota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA399133 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5517001 5517001 PRJNA399133_P_NODE_4385_length_242_cov_1.821256_g4297_i0 PRJNA399133 4385 242 1.821256 4.40743952 Pendulispora rubella 2741070 Bacteria Bacteria 147 9.72e-31   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g4297 i0 96.591 11.2851239669421 88 3 67 0 1 88 7289172 7289259 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 2731 147 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
7458741 7458741 PRJNA399133_P_NODE_12366_length_150_cov_3.426087_g12278_i0 PRJNA399133 12366 150 3.426087 5.1391305 Pendulispora 3375062 Bacteria Bacteria 150 4.2099999999999997e-32   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g12278 i0 84.667 52.1866666666667 150 23 100 0 1 150 9852998 9852849 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 7828 150 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
12559523 12559523 PRJNA399133_P_NODE_2710_length_303_cov_2.470149_g2622_i0 PRJNA399133 2710 303 2.470149 7.48455147 Myxococcia 32015 Bacteria Bacteria 381 3.169999999999999e-101   NTclustered gi|913610804|gb|CP012333.1| 1391654 g2622 i0 89.439 124.415841584158 303 31 100 1 1 303 7090163 7090464 Labilithrix luteola strain DSM 27648, complete genome blastn 37698 383 0.994778067885117 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
19539024 19539024 PRJNA399133_P_NODE_1636_length_392_cov_3.176471_g1550_i0 PRJNA399133 1636 392 3.176471 12.45176632 Pendulispora brunnea 2905690 Bacteria Bacteria 355 2.55e-93   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g1550 i0 85.387 267.913265306122 349 44 88 6 46 391 7409356 7409012 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 105022 355 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
24032569 24032569 PRJNA399133_P_NODE_11759_length_154_cov_2.016807_g11671_i0 PRJNA399133 11759 154 2.016807 3.10588278 Myxococcia 32015 Bacteria Bacteria 224 2.5299999999999994e-54   NTclustered gi|1127377833|gb|CP016908.1| 1882918 g11671 i0 92.857 136.467532467532 154 11 100 0 1 154 1551548 1551395 Pajaroellobacter abortibovis strain BTF92-0548A/99-0131, genome blastn 21016 224 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Pajaroellobacter Pajaroellobacter abortibovis
27534527 27534527 PRJNA399133_P_NODE_5243_length_229_cov_1.773196_g5155_i0 PRJNA399133 5243 229 1.773196 4.06061884 Bacteria 2 Bacteria Bacteria 52 1.7e-5   NR MCA9503384.1 2026763 g5155 i0 95.8 1.25764192139738 24 1 31.4 0 73 2 357 380 MCA9503384.1 NAD(P)/FAD-dependent oxidoreductase [Myxococcales bacterium] diamond 288 52 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28717693 28717693 PRJNA399133_P_NODE_7087_length_197_cov_1.666667_g6999_i0 PRJNA399133 7087 197 1.666667 3.28333399 Myxococcales bacterium 2026763 Bacteria Bacteria 67.8 1.5e-11   NR MDO9016594.1 2026763 g6999 i0 79.5 1.79695431472081 39 8 59.4 0 192 76 167 205 MDO9016594.1 hypothetical protein [Myxococcales bacterium] diamond 354 67.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31040268 31040268 PRJNA399133_P_NODE_8455_length_180_cov_2.193103_g8367_i0 PRJNA399133 8455 180 2.193103 3.9475854 Pseudomonadati 3379134 Bacteria Bacteria 45.4 0.00187   NR MFT3707833.1 1872627 g8367 i0 55.6 2.46666666666667 54 22 90 1 162 1 847 898 MFT3707833.1 putative Ig domain-containing protein [Archangium sp.] diamond 444 45.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
32510159 32510159 PRJNA399133_P_NODE_2699_length_304_cov_1.732342_g2611_i0 PRJNA399133 2699 304 1.732342 5.26631968 Myxococcota bacterium 2818507 Bacteria Bacteria 88.6 5.98e-18   NR MDQ2644660.1 2818507 g2611 i0 58.8 0.671052631578947 68 28 67.1 0 12 215 709 776 MDQ2644660.1 S8 family peptidase [Myxococcota bacterium] diamond 204 88.6 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;