RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA399133" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA399133 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27833423 27833423 PRJNA399133_P_NODE_6524_length_206_cov_0.935673_g6436_i0 PRJNA399133 6524 206 0.935673 1.92748638 Minisyncoccota bacterium 2053589 Bacteria Bacteria 96.3 3.23e-21   NR HPI81636.1 2053589 g6436 i0 64.2 0.975728155339806 67 24 97.6 0 5 205 544 610 HPI81636.1 glycosyltransferase [Candidatus Paceibacterota bacterium] diamond 201 96.3 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28039747 28039747 PRJNA399133_P_NODE_3345_length_275_cov_1.529167_g3257_i0 PRJNA399133 3345 275 1.529167 4.20520925 Bacillati 1783272 Bacteria Bacteria 50.4 1.02e-4   NR HTE49158.1 2053589 g3257 i0 45.7 1.48363636363636 70 34 73.1 2 208 8 32 100 HTE49158.1 peptidoglycan-binding domain-containing protein [Candidatus Paceibacterota bacterium] diamond 408 50.8 0.992125984251969 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29460202 29460202 PRJNA399133_P_NODE_10710_length_161_cov_1.904762_g10622_i0 PRJNA399133 10710 161 1.904762 3.06666682 root 1 Root_unresolved Root_unresolved 43.5 0.00658   NR MFA5360625.1 2053589 g10622 i0 44.6 7.2111801242236 56 26 98.8 2 160 2 238 291 MFA5360625.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 1161 43.5 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
30643967 30643967 PRJNA399133_P_NODE_7193_length_195_cov_3.343750_g7105_i0 PRJNA399133 7193 195 3.34375 6.5203125 Minisyncoccota bacterium 2053589 Bacteria Bacteria 62.8 5.67e-10   NR HPI82506.1 2053589 g7105 i0 70.3 1.21538461538462 37 11 56.9 0 192 82 164 200 HPI82506.1 GIY-YIG nuclease family protein [Candidatus Paceibacterota bacterium] diamond 237 62.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
32604619 32604619 PRJNA399133_P_NODE_6080_length_213_cov_2.539326_g5992_i0 PRJNA399133 6080 213 2.539326 5.40876438 Minisyncoccota bacterium 2053589 Bacteria Bacteria 65.9 1.74e-10   NR MDP7366801.1 2053589 g5992 i0 49.3 0.971830985915493 69 35 97.2 0 2 208 366 434 MDP7366801.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 207 65.9 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;