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contig_metadata

7 rows where bioproject = "PRJNA399133" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA399133 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1688154 1688154 PRJNA399133_P_NODE_7502_length_191_cov_3.955128_g7414_i0 PRJNA399133 7502 191 3.955128 7.55429448 Naegleria pringsheimi 234921 Heterolobosea other_Eukaryota 331 1.88e-86   NTclustered gi|2515557648|gb|OR045415.1| 234921 g7414 i0 97.906 62.4607329842932 191 4 100 0 1 191 5749 5559 Naegleria pringsheimi strain Singh(s) rDNA-containing extrachromosomal element genomic sequence; 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 11930 331 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria pringsheimi
2356280 2356280 PRJNA399133_P_NODE_3342_length_275_cov_1.666667_g3254_i0 PRJNA399133 3342 275 1.666667 4.58333425 Naegleria 5761 Heterolobosea other_Eukaryota 436 5.969999999999999e-118   NTclustered gi|2618963742|gb|OR769034.1| 5762 g3254 i0 95.273 10.3818181818182 275 13 100 0 1 275 5490 5764 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 2855 436 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
5516887 5516887 PRJNA399133_P_NODE_10305_length_164_cov_1.550388_g10217_i0 PRJNA399133 10305 164 1.550388 2.54263632 Naegleria jamiesoni 36335 Heterolobosea other_Eukaryota 287 3.45e-73   NTclustered gi|2351573|gb|U80061.1|NJU80061 36335 g10217 i0 98.182 98.4024390243902 165 1 100 2 1 164 489 652 Naegleria jamiesoni 18S ribosomal RNA gene, partial sequence blastn 16138 287 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria jamiesoni
7458743 7458743 PRJNA399133_P_NODE_12406_length_150_cov_2.086957_g12318_i0 PRJNA399133 12406 150 2.086957 3.1304355 Naegleria 5761 Heterolobosea other_Eukaryota 261 1.86e-65   NTclustered gi|2618963742|gb|OR769034.1| 5762 g12318 i0 98 70.2933333333333 150 3 100 0 1 150 5352 5203 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 10544 261 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
11284079 11284079 PRJNA399133_P_NODE_11489_length_156_cov_1.520661_g11401_i0 PRJNA399133 11489 156 1.520661 2.37223116 Naegleria 5761 Heterolobosea other_Eukaryota 257 2.54e-64   NTclustered gi|2618963742|gb|OR769034.1| 5762 g11401 i0 96.753 14.1923076923077 154 5 99 0 3 156 3543 3390 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 2214 257 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
12559538 12559538 PRJNA399133_P_NODE_3990_length_252_cov_3.018433_g3902_i0 PRJNA399133 3990 252 3.018433 7.60645116 Naegleria 5761 Heterolobosea other_Eukaryota 178 3.61e-40   NTclustered gi|2618963742|gb|OR769034.1| 5762 g3902 i0 100 27.297619047619 96 0 79 0 157 252 3239 3334 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 6879 178 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
16383331 16383331 PRJNA399133_P_NODE_893_length_539_cov_3.049603_g815_i0 PRJNA399133 893 539 3.049603 16.43736017 Naegleria 5761 Heterolobosea other_Eukaryota 730 0   NTclustered gi|2618963742|gb|OR769034.1| 5762 g815 i0 90.78 18.9777365491651 564 27 100 1 1 539 3657 4220 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 10229 736 0.991847826086957 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;