RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA399133", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA399133 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30486185 30486185 PRJNA399133_P_NODE_11493_length_156_cov_1.471074_g11405_i0 PRJNA399133 11493 156 1.471074 2.29487544 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 83.6 3.14e-17   NR HUW46043.1 2026734 g11405 i0 64.7 1.96153846153846 51 18 98.1 0 3 155 203 253 HUW46043.1 terminase large subunit [Dehalococcoidia bacterium] diamond 306 83.6 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
31339281 31339281 PRJNA399133_P_NODE_5436_length_227_cov_2.708333_g5348_i0 PRJNA399133 5436 227 2.708333 6.14791591 Anaerolineales bacterium 2073117 Bacteria Bacteria 84.7 4.87e-17   NR MDP6583685.1 2073117 g5348 i0 54.4 0.898678414096916 68 31 89.9 0 214 11 242 309 MDP6583685.1 hypothetical protein [Anaerolineales bacterium] diamond 204 84.7 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;