RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA399133", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA399133 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18264880 18264880 PRJNA399133_P_NODE_3915_length_255_cov_1.986364_g3827_i0 PRJNA399133 3915 255 1.986364 5.0652282 Cercomonas agilis 310805 SAR_Eukaryotes SAR_Eukaryotes 259 1.27e-64   NTclustered gi|58414956|gb|AY748813.1| 310805 g3827 i0 86.441 133.580392156863 236 32 93 0 20 255 285 50 Cercomonas agilis polyubiquitin (UBQ) gene, partial cds blastn 34063 259 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas agilis
23365347 23365347 PRJNA399133_P_NODE_4679_length_234_cov_2.507538_g4591_i0 PRJNA399133 4679 234 2.507538 5.86763892 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 427 2.9799999999999993e-115   NTclustered gi|238617602|gb|FJ973377.1| 188950 g4591 i0 99.573 88.8589743589744 234 1 100 0 1 234 93 326 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 20793 427 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
24639735 24639735 PRJNA399133_P_NODE_8520_length_179_cov_4.118056_g8432_i0 PRJNA399133 8520 179 4.118056 7.37132024 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 331 1.74e-86   NTclustered gi|238617602|gb|FJ973377.1| 188950 g8432 i0 100 59.4301675977654 179 0 100 0 1 179 1651 1473 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 10638 331 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;