RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA399133", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA399133 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1688054 1688054 PRJNA399133_P_NODE_2402_length_321_cov_1.842657_g2314_i0 PRJNA399133 2402 321 1.842657 5.91492897 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 58.4 6.47e-4   NTclustered gi|404352171|gb|JX283477.1| 5833 g2314 i0 100 31.9065420560748 31 0 10 0 282 312 134 164 Plasmodium falciparum isolate JGD39 merozoite surface protein 1 gene, partial cds blastn 10242 58.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
19539003 19539003 PRJNA399133_P_NODE_116_length_1431_cov_5.164756_g93_i0 PRJNA399133 116 1431 5.164756 73.90765836 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 2410 0   NTclustered gi|1624698158|ref|XM_029013947.1| 189622 g93 i0 97.042 1505.19566736548 1420 35 99 2 1 1418 1888 474 Babesia ovata endonuclease-reverse transcriptase (BOVATA_050300), partial mRNA blastn 2153935 2410 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
20814853 20814853 PRJNA399133_P_NODE_3557_length_267_cov_2.099138_g3469_i0 PRJNA399133 3557 267 2.099138 5.60469846 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 483 7.31e-132   NTclustered gi|1624698158|ref|XM_029013947.1| 189622 g3469 i0 99.251 515.786516853933 267 2 100 0 1 267 222 488 Babesia ovata endonuclease-reverse transcriptase (BOVATA_050300), partial mRNA blastn 137715 483 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;