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contig_metadata

17 rows where bioproject = "PRJNA399133" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 17 ✖

bioproject 1

  • PRJNA399133 · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4240287 4240287 PRJNA399133_P_NODE_11944_length_153_cov_1.694915_g11856_i0 PRJNA399133 11944 153 1.694915 2.59321995 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 156 9.29e-34   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g11856 i0 85.906 19.8954248366013 149 18 97 3 4 151 1931529 1931383 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 3044 156 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
27123408 27123408 PRJNA399133_P_NODE_6142_length_212_cov_2.254237_g6054_i0 PRJNA399133 6142 212 2.254237 4.77898244 Bacteria 2 Bacteria Bacteria 105 9.13e-25   NR MAO21141.1 2026778 g6054 i0 68.6 4.95283018867925 70 22 99.1 0 212 3 164 233 MAO21141.1 PBSX family phage terminase large subunit [Phycisphaerae bacterium] diamond 1050 105 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium
27138169 27138169 PRJNA399133_P_NODE_5242_length_229_cov_1.773196_g5154_i0 PRJNA399133 5242 229 1.773196 4.06061884 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 43.5 0.016   NR MBA3815693.1 2052176 g5154 i0 38.5 1.02183406113537 78 45 98.3 1 3 227 325 402 MBA3815693.1 insulinase family protein [Parachlamydiaceae bacterium] diamond 234 43.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
27233462 27233462 PRJNA399133_P_NODE_5783_length_219_cov_2.929348_g5695_i0 PRJNA399133 5783 219 2.929348 6.41527212 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 68.9 2.66e-12   NR MDB4418055.1 2562705 g5695 i0 62.5 0.767123287671233 56 21 76.7 0 50 217 44 99 MDB4418055.1 hypothetical protein [Akkermansiaceae bacterium] diamond 168 68.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
27391638 27391638 PRJNA399133_P_NODE_11303_length_157_cov_1.967213_g11215_i0 PRJNA399133 11303 157 1.967213 3.08852441 Planctomycetota bacterium 2026780 Bacteria Bacteria 48.9 7.76e-5   NR MBX3461222.1 2026780 g11215 i0 52.2 0.878980891719745 46 22 87.9 0 1 138 462 507 MBX3461222.1 YifB family Mg chelatase-like AAA ATPase [Planctomycetota bacterium] diamond 138 48.9 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
27454839 27454839 PRJNA399133_P_NODE_463_length_785_cov_3.044000_g304_i1 PRJNA399133 463 785 3.044 23.8954 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 80.5 4.03e-14   NR NBQ64003.1 2026799 g304 i1 46.1 1.03566878980892 89 43 33.6 3 10 273 119 203 NBQ64003.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 813 80.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29128278 29128278 PRJNA399133_P_NODE_4929_length_229_cov_2.340206_g4841_i0 PRJNA399133 4929 229 2.340206 5.35907174 Planctomycetota bacterium 2026780 Bacteria Bacteria 75.9 6.76e-14   NR MFN3241241.1 2026780 g4841 i0 52.6 0.995633187772926 76 25 99.6 1 1 228 939 1003 MFN3241241.1 Ig-like domain-containing protein [Planctomycetota bacterium] diamond 228 75.9 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29128280 29128280 PRJNA399133_P_NODE_5549_length_225_cov_1.473684_g5461_i0 PRJNA399133 5549 225 1.473684 3.315789 Planctomycetota bacterium 2026780 Bacteria Bacteria 84.3 6.83e-18   NR NDG63678.1 2026780 g5461 i0 54.7 1 75 34 100 0 225 1 148 222 NDG63678.1 polynucleotide kinase [Planctomycetota bacterium] diamond 225 84.3 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29506846 29506846 PRJNA399133_P_NODE_9490_length_171_cov_1.176471_g9402_i0 PRJNA399133 9490 171 1.176471 2.01176541 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 43.5 0.00711   NR HAM40894.1 2035772 g9402 i0 38.6 1.98245614035088 57 32 100 1 1 171 160 213 HAM40894.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 339 43.5 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30580724 30580724 PRJNA399133_P_NODE_4413_length_241_cov_2.160194_g4325_i0 PRJNA399133 4413 241 2.160194 5.20606754 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 44.3 0.00985   NR NBV48909.1 2026799 g4325 i0 76.9 0.323651452282158 26 6 32.4 0 83 6 52 77 NBV48909.1 phage major capsid protein [Verrucomicrobiota bacterium] diamond 78 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31117801 31117801 PRJNA399133_P_NODE_5135_length_229_cov_1.876289_g5047_i0 PRJNA399133 5135 229 1.876289 4.29670181 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 47.8 5.11e-4   NR MCD6049097.1 2026799 g5047 i0 36.8 0.890829694323144 68 30 89.1 1 206 3 1 55 MCD6049097.1 sensor hybrid histidine kinase [Verrucomicrobiota bacterium] diamond 204 47.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31940186 31940186 PRJNA399133_P_NODE_6417_length_207_cov_2.174419_g6329_i0 PRJNA399133 6417 207 2.174419 4.50104733 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 106 2.32e-25   NR MDB4418045.1 2562705 g6329 i0 69.6 1 69 21 100 0 1 207 163 231 MDB4418045.1 hypothetical protein [Akkermansiaceae bacterium] diamond 207 106 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
32130377 32130377 PRJNA399133_P_NODE_12158_length_152_cov_1.358974_g12070_i0 PRJNA399133 12158 152 1.358974 2.06564048 Planctomycetota bacterium 2026780 Bacteria Bacteria 82.4 8.96e-18   NR MFN5329251.1 2026780 g12070 i0 80.9 0.927631578947368 47 9 92.8 0 152 12 148 194 MFN5329251.1 lambda exonuclease family protein [Planctomycetota bacterium] diamond 141 82.4 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32383323 32383323 PRJNA399133_P_NODE_10979_length_159_cov_2.169355_g10891_i0 PRJNA399133 10979 159 2.169355 3.44927445 Planctomycetota bacterium 2026780 Bacteria Bacteria 62 1.54e-9   NR MFT6108405.1 2026780 g10891 i0 48.1 1.9622641509434 52 27 98.1 0 3 158 130 181 MFT6108405.1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Planctomycetota bacterium] diamond 312 62 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32478470 32478470 PRJNA399133_P_NODE_919_length_532_cov_2.917505_g841_i0 PRJNA399133 919 532 2.917505 15.5211266 Planctomycetota bacterium 2026780 Bacteria Bacteria 105 5.85e-23   NR MCH2572347.1 2026780 g841 i0 62.1 0.490601503759398 87 31 48.5 2 2 259 342 427 MCH2572347.1 hypothetical protein [Planctomycetota bacterium] diamond 261 105 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32635885 32635885 PRJNA399133_P_NODE_2100_length_345_cov_2.154839_g2013_i0 PRJNA399133 2100 345 2.154839 7.43419455 Victivallales bacterium 2212475 Bacteria Bacteria 53.5 1.16e-5   NR MFA7185129.1 2212475 g2013 i0 30.6 1.05217391304348 121 56 84.3 2 6 296 109 225 MFA7185129.1 hypothetical protein [Victivallales bacterium] diamond 363 53.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
32793290 32793290 PRJNA399133_P_NODE_8120_length_184_cov_1.610738_g8032_i0 PRJNA399133 8120 184 1.610738 2.96375792 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 66.6 6.46e-11   NR MDB4571673.1 2562705 g8032 i0 50 1.89130434782609 58 29 94.6 0 181 8 470 527 MDB4571673.1 hypothetical protein [Akkermansiaceae bacterium] diamond 348 66.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;