RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA399133", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA399133 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6790929 6790929 PRJNA399133_P_NODE_1386_length_430_cov_2.215190_g1302_i0 PRJNA399133 1386 430 2.21519 9.525317 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 254 1.4699999999999996e-81   NR MCB0746507.1 2026749 g1302 i0 84.2 2.03720930232558 146 20 99.8 1 430 2 188 333 MCB0746507.1 N-6 DNA methylase [Ignavibacteriota bacterium] diamond 876 254 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
28117543 28117543 PRJNA399133_P_NODE_3405_length_272_cov_3.654008_g3317_i0 PRJNA399133 3405 272 3.654008 9.93890176 Ignavibacteria bacterium 2053306 Bacteria Bacteria 54.7 3.18e-6   NR MBM4179731.1 2053306 g3317 i0 50 1.61029411764706 66 30 71.7 2 257 63 199 262 MBM4179731.1 hypothetical protein [Ignavibacteria bacterium] diamond 438 54.7 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
29380624 29380624 PRJNA399133_P_NODE_5509_length_226_cov_1.225131_g5421_i0 PRJNA399133 5509 226 1.225131 2.76879606 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 84.7 8.41e-18   NR HMN22974.1 2651163 g5421 i0 75 0.63716814159292 48 12 63.7 0 225 82 192 239 HMN22974.1 site-specific DNA-methyltransferase [Ignavibacteriaceae bacterium] diamond 144 84.7 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;