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contig_metadata

34 rows where bioproject = "PRJNA399133" and tax_clade = "Embryophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 34 ✖

bioproject 1

  • PRJNA399133 · 34 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1080904 1080904 PRJNA399133_P_NODE_3481_length_269_cov_27.333333_g3393_i0 PRJNA399133 3481 269 27.333333 73.52666577 Magnoliopsida 3398 Plants Plants 342 1.31e-89   NTclustered gi|2295544185|ref|XR_007673180.1| 57926 g3393 i0 97.5 107.390334572491 200 5 100 0 1 200 2402 2601 PREDICTED: Argentina anserina 28S ribosomal RNA (LOC126804222), rRNA blastn 28888 342 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Argentina Argentina anserina
1688079 1688079 PRJNA399133_P_NODE_3822_length_258_cov_1.937220_g3734_i0 PRJNA399133 3822 258 1.93722 4.9980276 Humulus lupulus 3486 Plants Plants 111 3.82e-20   NTclustered gi|4691274|emb|AJ236704.1| 3486 g3734 i0 86.408 10.2713178294574 103 13 40 1 3 104 1503 1401 Humulus lupulus Hl7SL-2 gene and 7SL RNA pseudogene blastn 2650 111 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Humulus Humulus lupulus
2356313 2356313 PRJNA399133_P_NODE_5982_length_215_cov_2.572222_g5894_i0 PRJNA399133 5982 215 2.572222 5.5302773 Poaceae 4479 Plants Plants 398 2.1099999999999997e-106   NTclustered gi|2922430323|ref|XR_011750254.1| 4522 g5894 i0 100 1126.70697674419 215 0 100 0 1 215 1489 1703 PREDICTED: Lolium perenne 28S ribosomal RNA (LOC139834554), rRNA blastn 242242 398 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium perenne
3631610 3631610 PRJNA399133_P_NODE_12523_length_150_cov_1.017391_g12435_i0 PRJNA399133 12523 150 1.017391 1.5260865 Musa 4640 Plants Plants 259 6.71e-65   NTclustered gi|2046373209|dbj|LC610760.1| 4641 g12435 i0 97.987 99.6866666666667 149 3 99 0 2 150 6291 6143 Musa acuminata cv. Kluai Khai genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, complete sequence blastn 14953 259 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Zingiberales Musaceae Musa Musa acuminata
3631721 3631721 PRJNA399133_P_NODE_8463_length_180_cov_2.000000_g8375_i0 PRJNA399133 8463 180 2 3.6 Eukaryota 2759 Plants Plants 169 1.4499999999999998e-37   NTclustered gi|1583143483|gb|MH837999.1| 3469 g8375 i0 84.302 114.027777777778 172 27 96 0 9 180 540062 540233 Papaver somniferum clone scf7180001502001 genomic sequence blastn 20525 169 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ranunculales Papaveraceae Papaver Papaver somniferum
4908855 4908855 PRJNA399133_P_NODE_4884_length_229_cov_6.319588_g4796_i0 PRJNA399133 4884 229 6.319588 14.47185652 root 1 Root_unresolved Root_unresolved 424 3.76e-114   NTclustered gi|2281547355|ref|NC_065219.1| 3747 g4796 i0 100 100.454148471616 229 0 100 0 1 229 238748 238520 Fragaria x ananassa mitochondrion, complete genome blastn 23004 424 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Fragaria Fragaria x ananassa
5516949 5516949 PRJNA399133_P_NODE_1945_length_358_cov_3.436533_g1858_i0 PRJNA399133 1945 358 3.436533 12.30278814 Setaria italica 4555 Plants Plants 608 1.599999999999999e-169   NTclustered gi|605059435|gb|KJ001642.1| 4555 g1858 i0 96.995 222.340782122905 366 3 100 2 1 358 98542 98177 Setaria italica chloroplast, complete genome blastn 79598 608 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Setaria Setaria italica
5517102 5517102 PRJNA399133_P_NODE_925_length_531_cov_2.723790_g847_i0 PRJNA399133 925 531 2.72379 14.4633249 Oryza sativa 4530 Plants Plants 809 0   NTclustered gi|32991256|dbj|AK106047.1| 39947 g847 i0 95.464 121.841807909605 507 23 95 0 1 507 922 1428 Oryza sativa Japonica Group cDNA clone:001-206-E08, full insert sequence blastn 64698 809 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
6183952 6183952 PRJNA399133_P_NODE_4205_length_246_cov_4.838863_g4117_i0 PRJNA399133 4205 246 4.838863 11.90360298 Ericaceae 4345 Plants Plants 455 1.4500000000000002e-123   NTclustered gi|2739979358|emb|OZ071053.1| 13385 g4117 i0 100 118.317073170732 246 0 100 0 1 246 184804 185049 Calluna vulgaris genome assembly, organelle: mitochondrion blastn 29106 455 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Ericaceae Calluna Calluna vulgaris
6790991 6790991 PRJNA399133_P_NODE_4566_length_237_cov_12.985149_g4478_i0 PRJNA399133 4566 237 12.985149 30.77480313 Camellia azalea 536625 Plants Plants 394 3.069999999999999e-105   NTclustered gi|346456644|gb|JN007274.1| 536625 g4478 i0 96.639 99.6118143459916 238 7 100 1 1 237 291 54 Camellia azalea isolate AA_2 26S ribosomal RNA gene, partial sequence blastn 23608 394 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Theaceae Camellia Camellia azalea
10617080 10617080 PRJNA399133_P_NODE_11469_length_156_cov_1.652893_g11381_i0 PRJNA399133 11469 156 1.652893 2.57851308 Hordeum vulgare 4513 Plants Plants 267 4.2199999999999997e-67   NTclustered gi|326497356|dbj|AK371065.1| 112509 g11381 i0 97.436 1.92948717948718 156 4 100 0 1 156 575 730 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2123O06 blastn 301 267 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
10617109 10617109 PRJNA399133_P_NODE_1749_length_380_cov_2.142029_g1662_i0 PRJNA399133 1749 380 2.142029 8.1397102 Oryza sativa 4530 Plants Plants 520 8.259999999999997e-143   NTclustered gi|32971027|dbj|AK061009.1| 39947 g1662 i0 91.316 121.755263157895 380 33 100 0 1 380 221 600 Oryza sativa Japonica Group cDNA clone:006-204-A10, full insert sequence blastn 46267 520 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
11284156 11284156 PRJNA399133_P_NODE_5329_length_229_cov_1.649485_g5241_i0 PRJNA399133 5329 229 1.649485 3.77732065 Poaceae 4479 Plants Plants 139 1.52e-28   NTclustered gi|300681517|emb|FN564434.1| 4565 g5241 i0 100 149.733624454148 75 0 66 0 155 229 1289886 1289812 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0954b blastn 34289 139 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
11284212 11284212 PRJNA399133_P_NODE_889_length_541_cov_5.460474_g811_i0 PRJNA399133 889 541 5.460474 29.54116434 Fragaria 3746 Plants Plants 1000 0   NTclustered gi|2281547355|ref|NC_065219.1| 3747 g811 i0 100 115.489833641405 541 0 100 0 1 541 19211 18671 Fragaria x ananassa mitochondrion, complete genome blastn 62480 1000 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Fragaria Fragaria x ananassa
11891986 11891986 PRJNA399133_P_NODE_10070_length_166_cov_0.916031_g9982_i0 PRJNA399133 10070 166 0.916031 1.52061146 Hordeum vulgare 4513 Plants Plants 302 1.2500000000000001e-77   NTclustered gi|326497356|dbj|AK371065.1| 112509 g9982 i0 99.398 4.31927710843374 166 1 100 0 1 166 173 338 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2123O06 blastn 717 302 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
13167084 13167084 PRJNA399133_P_NODE_691_length_634_cov_3.724541_g618_i0 PRJNA399133 691 634 3.724541 23.61358994 Oryza sativa 4530 Plants Plants 745 0   NTclustered gi|32971027|dbj|AK061009.1| 39947 g618 i0 90.86 98.5741324921136 558 47 88 2 1 556 826 1381 Oryza sativa Japonica Group cDNA clone:006-204-A10, full insert sequence blastn 62496 745 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
13834410 13834410 PRJNA399133_P_NODE_7651_length_189_cov_3.103896_g7563_i0 PRJNA399133 7651 189 3.103896 5.86636344 Magnoliopsida 3398 Plants Plants 350 5.14e-92   NTclustered gi|929046211|gb|KR059940.1| 3483 g7563 i0 100 118.613756613757 189 0 100 0 1 189 367249 367437 Cannabis sativa cultivar Carmagnola mitochondrion, complete genome blastn 22418 350 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Cannabis Cannabis sativa
15715903 15715903 PRJNA399133_P_NODE_1453_length_418_cov_1.861619_g1369_i0 PRJNA399133 1453 418 1.861619 7.78156742 Oryza sativa 4530 Plants Plants 455 2.62e-123   NTclustered gi|32969792|dbj|AK059774.1| 39947 g1369 i0 89.344 10.6507177033493 366 34 98 4 50 410 994 629 Oryza sativa Japonica Group cDNA clone:006-204-A02, full insert sequence blastn 4452 455 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
15715918 15715918 PRJNA399133_P_NODE_2393_length_321_cov_3.237762_g2305_i0 PRJNA399133 2393 321 3.237762 10.39321602 Potentilla clandestina 1541695 Plants Plants 588 1.8599999999999994e-163   NTclustered gi|2692964475|ref|NC_086988.1| 1541695 g2305 i0 99.688 191.16199376947 321 1 100 0 1 321 106944 106624 Potentilla clandestina voucher Li QQ 20170720025 chloroplast, complete genome blastn 61363 588 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Potentilla Potentilla clandestina
16383255 16383255 PRJNA399133_P_NODE_433_length_819_cov_34.299745_g375_i0 PRJNA399133 433 819 34.299745 280.91491155 Pinaceae 3318 Plants Plants 928 0   NTclustered gi|1878849209|gb|MT796545.1| 3339 g375 i0 93.082 184.655677655678 636 41 98 2 187 819 6963 6328 Pinus contorta isolate DM604 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 151233 928 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Pinus Pinus contorta
16990788 16990788 PRJNA399133_P_NODE_5094_length_229_cov_1.922680_g5006_i0 PRJNA399133 5094 229 1.92268 4.4029372 Olea europaea 4146 Plants Plants 117 7.1400000000000005e-22   NTclustered gi|1279063535|ref|XM_023037846.1| 158386 g5006 i0 94.667 0.655021834061135 75 4 33 0 155 229 272 346 PREDICTED: Olea europaea var. sylvestris stress-related protein-like (LOC111408075), mRNA blastn 150 117 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Oleaceae Olea Olea europaea
16990801 16990801 PRJNA399133_P_NODE_5854_length_218_cov_1.765027_g5766_i0 PRJNA399133 5854 218 1.765027 3.84775886 Prunus dulcis 3755 Plants Plants 206 1.4e-48   NTclustered gi|2699132189|emb|OZ022204.1| 3755 g5766 i0 86.082 84.5733944954128 194 23 88 4 27 218 20704580 20704389 Prunus dulcis genome assembly, chromosome: 8 blastn 18437 206 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Prunus Prunus dulcis
17658406 17658406 PRJNA399133_P_NODE_4214_length_246_cov_2.507109_g4126_i0 PRJNA399133 4214 246 2.507109 6.16748814 Magnoliopsida 3398 Plants Plants 453 5.2100000000000006e-123   NTclustered gi|2627918640|ref|NC_084405.1| 4205 g4126 i0 100 186.227642276423 245 0 99 0 1 245 109529 109773 Viburnum acerifolium chloroplast, complete genome blastn 45812 453 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Dipsacales Adoxaceae Viburnum Viburnum acerifolium
19539150 19539150 PRJNA399133_P_NODE_9136_length_174_cov_1.021583_g9048_i0 PRJNA399133 9136 174 1.021583 1.77755442 Zea mays 4577 Plants Plants 246 6.26e-61   NTclustered gi|22121751|gb|AY123624.1| 4577 g9048 i0 92.941 30.1954022988506 170 11 100 1 6 174 503 672 Zea mays transgenic Pat (Pat) gene, partial cds blastn 5254 246 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
22757742 22757742 PRJNA399133_P_NODE_10478_length_163_cov_1.375000_g10390_i0 PRJNA399133 10478 163 1.375 2.24125 Oryza 4527 Plants Plants 52.8 0.014   NTclustered gi|20503059|gb|AC034258.10| 39947 g10390 i0 100 0.343558282208589 28 0 17 0 7 34 31353 31326 Oryza sativa chromosome 10 BAC OSJNBb0011A08 genomic sequence, complete sequence blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
22757776 22757776 PRJNA399133_P_NODE_2498_length_315_cov_3.696429_g2410_i0 PRJNA399133 2498 315 3.696429 11.64375135 Magnoliopsida 3398 Plants Plants 544 3.99e-150   NTclustered gi|1824670470|gb|MN905580.1| 32219 g2410 i0 97.778 103.019047619048 315 7 100 0 1 315 17 331 Amelanchier alnifolia voucher C.A. Wellner 2835 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 32451 549 0.990892531876138 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Amelanchier Amelanchier alnifolia
23365431 23365431 PRJNA399133_P_NODE_9039_length_174_cov_3.791367_g8951_i0 PRJNA399133 9039 174 3.791367 6.59697858 Oryza sativa 4530 Plants Plants 209 8.21e-50   NTclustered gi|32971027|dbj|AK061009.1| 39947 g8951 i0 88.571 89.4080459770115 175 16 99 4 1 173 624 796 Oryza sativa Japonica Group cDNA clone:006-204-A10, full insert sequence blastn 15557 209 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
24032608 24032608 PRJNA399133_P_NODE_3239_length_278_cov_8.106996_g3151_i0 PRJNA399133 3239 278 8.106996 22.53744888 Ericaceae 4345 Plants Plants 470 5.959999999999998e-128   NTclustered gi|33312037|gb|AF419800.1| 13417 g3151 i0 97.122 111.226618705036 278 8 100 0 1 278 876 599 Chamaedaphne calyculata 18S ribosomal RNA gene, partial sequence blastn 30921 470 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Ericaceae Chamaedaphne Chamaedaphne calyculata
24032638 24032638 PRJNA399133_P_NODE_5659_length_222_cov_2.208556_g5571_i0 PRJNA399133 5659 222 2.208556 4.90299432 Poaceae 4479 Plants Plants 52.8 0.02   NTclustered gi|1897958810|ref|XR_004853261.1| 4577 g5571 i0 100 0.630630630630631 28 0 13 0 33 60 209 182 PREDICTED: Zea mays uncharacterized lncRNA (LOC118473579), transcript variant X2, ncRNA blastn 140 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
24639657 24639657 PRJNA399133_P_NODE_4400_length_241_cov_3.873786_g4312_i0 PRJNA399133 4400 241 3.873786 9.33582426 Citrus sinensis 2711 Plants Plants 390 4.05e-104   NTclustered gi|2395998644|ref|XR_008051163.1| 2711 g4312 i0 95.851 20.8630705394191 241 10 100 0 1 241 753 513 PREDICTED: Citrus sinensis uncharacterized LOC127899203 (LOC127899203), ncRNA blastn 5028 390 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Rutaceae Citrus Citrus sinensis
24639763 24639763 PRJNA399133_P_NODE_9940_length_167_cov_1.492424_g9852_i0 PRJNA399133 9940 167 1.492424 2.49234808 Asparagus officinalis 4686 Plants Plants 152 1.3399999999999998e-32   NTclustered gi|1150745047|ref|XM_020391108.1| 4686 g9852 i0 87.218 31.1017964071856 133 17 80 0 8 140 560 692 PREDICTED: Asparagus officinalis 40S ribosomal protein S5-like (LOC109824499), mRNA blastn 5194 152 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asparagales Asparagaceae Asparagus Asparagus officinalis
25306944 25306944 PRJNA399133_P_NODE_10580_length_162_cov_1.826772_g10492_i0 PRJNA399133 10580 162 1.826772 2.95937064 Malus 3749 Plants Plants 300 4.36e-77   NTclustered gi|2810943367|gb|CP168765.1| 3750 g10492 i0 100 102 162 0 100 0 1 162 27102 26941 Malus domestica cultivar Golden Delicious chromosome 01 blastn 16524 300 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Malus Malus domestica
26726838 26726838 PRJNA399133_P_NODE_6201_length_211_cov_1.795455_g6113_i0 PRJNA399133 6201 211 1.795455 3.78841005 Urochloa decumbens 240449 Plants Plants 41.6 0.0105   NR CAL4931470.1 240449 g6113 i0 38.1 0.895734597156398 63 38 89.6 1 191 3 4 65 CAL4931470.1 unnamed protein product [Urochloa decumbens] diamond 189 41.6 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Urochloa Urochloa decumbens
31971931 31971931 PRJNA399133_P_NODE_4098_length_249_cov_2.584112_g4010_i0 PRJNA399133 4098 249 2.584112 6.43443888 Hibiscus sabdariffa 183260 Plants Plants 44.7 0.0076   NR KAK8528057.1 183260 g4010 i0 52.1 0.578313253012048 48 23 57.8 0 249 106 117 164 KAK8528057.1 hypothetical protein V6N13_100804, partial [Hibiscus sabdariffa] diamond 144 44.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Hibiscus Hibiscus sabdariffa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;