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contig_metadata

19 rows where bioproject = "PRJNA397736", tax_clade = "Opisthokonta" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 19 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 19 ✖

bioproject 1

  • PRJNA397736 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4239195 4239195 PRJNA397736_S_NODE_2684_length_162_cov_1.669173_g2648_i0 PRJNA397736 2684 162 1.669173 2.70406026 Sus scrofa 9823 Chordata Chordata 278 2.04e-70   NTclustered gi|165931778|emb|AM932505.1| 9823 g2648 i0 98.113 67.7901234567901 159 3 100 0 1 159 279 437 Sus scrofa centromeric satellite repeat, clone Pg3 blastn 10982 278 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
10616033 10616033 PRJNA397736_S_NODE_29_length_1461_cov_21.652235_g24_i0 PRJNA397736 29 1461 21.652235 316.33915335 root 1 Root_unresolved Root_unresolved 659 2.229999999999999e-233   NR AAI35234.1 8364 g24 i0 67.6 343.047227926078 478 154 98.2 1 28 1461 8 484 AAI35234.1 hsp70 protein, partial [Xenopus tropicalis] diamond 501192 665 0.990977443609023 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
11890937 11890937 PRJNA397736_S_NODE_1330_length_243_cov_5.934579_g1294_i0 PRJNA397736 1330 243 5.934579 14.42102697 Latimeria chalumnae 7897 Chordata Chordata 54.7 0.006   NTclustered gi|2721749050|ref|XM_005986866.2| 7897 g1294 i0 100 0.119341563786008 29 0 12 0 75 103 2346 2374 PREDICTED: Latimeria chalumnae frizzled-9 (LOC102349865), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
14441046 14441046 PRJNA397736_S_NODE_2052_length_189_cov_5.162500_g2016_i0 PRJNA397736 2052 189 5.1625 9.757125 Sus scrofa 9823 Chordata Chordata 263 6.879999999999999e-66   NTclustered gi|2103|emb|X16513.1| 9823 g2016 i0 93.258 41.3333333333333 178 12 100 0 11 188 417 240 Pig gender-neutral repetitive DNA blastn 7812 263 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
27092128 27092128 PRJNA397736_S_NODE_1162_length_264_cov_5.451064_g1126_i0 PRJNA397736 1162 264 5.451064 14.39080896 root 1 Root_unresolved Root_unresolved 174 3.73e-53   NR XP_037755641.2 8469 g1126 i0 98.9 23.6136363636364 87 1 98.9 0 262 2 57 143 XP_037755641.2 40S ribosomal protein S13 [Chelonia mydas] diamond 6234 175 0.994285714285714 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Chelonia Chelonia mydas
27440067 27440067 PRJNA397736_S_NODE_1283_length_248_cov_3.876712_g1247_i0 PRJNA397736 1283 248 3.876712 9.61424576 Cervidae 9850 Chordata Chordata 155 8.62e-44   NR OWK11568.1 46360 g1247 i0 81.9 2.2741935483871 94 5 99.2 1 246 1 47 140 OWK11568.1 hypothetical protein Celaphus_00003504 [Cervus elaphus hippelaphus] diamond 564 155 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus elaphus
27724308 27724308 PRJNA397736_S_NODE_344_length_507_cov_37.933054_g311_i0 PRJNA397736 344 507 37.933054 192.32058378 Ichthyophis 8452 Chordata Chordata 238 1.22e-76   NR AJT34968.1 8453 g311 i0 93.9 524.07100591716 132 8 78.1 0 398 3 89 220 AJT34968.1 cytochrome oxidase subunit 1, partial [Ichthyophis bannanicus] diamond 265704 240 0.991666666666667 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Ichthyophiidae Ichthyophis Ichthyophis bannanicus
28292112 28292112 PRJNA397736_S_NODE_1666_length_214_cov_15.362162_g1630_i0 PRJNA397736 1666 214 15.362162 32.87502668 Aves 8782 Chordata Chordata 129 2.9899999999999998e-34   NR XP_047929473.2 8845 g1630 i0 95.3 17.214953271028 64 3 89.7 0 23 214 122 185 XP_047929473.2 small ribosomal subunit protein eS6 [Anser cygnoides] diamond 3684 129 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
28955571 28955571 PRJNA397736_S_NODE_2128_length_186_cov_1.961783_g2092_i0 PRJNA397736 2128 186 1.961783 3.64891638 Chordata 7711 Chordata Chordata 125 3.48e-33   NR XP_038659826.1 7830 g2092 i0 96.7 64.9354838709677 61 2 98.4 0 3 185 227 287 XP_038659826.1 ribosome biogenesis protein NSA2 homolog [Scyliorhinus canicula] diamond 12078 126 0.992063492063492 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
29776114 29776114 PRJNA397736_S_NODE_2751_length_160_cov_2.641221_g2715_i0 PRJNA397736 2751 160 2.641221 4.2259536 Chordata 7711 Chordata Chordata 107 1.85e-25   NR XP_032821688.1 7757 g2715 i0 96.2 118.95 52 2 97.5 0 3 158 87 138 XP_032821688.1 nucleolar GTP-binding protein 1 [Petromyzon marinus] diamond 19032 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
30738807 30738807 PRJNA397736_S_NODE_794_length_322_cov_67.020478_g758_i0 PRJNA397736 794 322 67.020478 215.80593916 Naja naja 35670 Chordata Chordata 168 1.92e-46   NR KAG8137473.1 35670 g758 i0 96.6 63.2142857142857 87 3 81.1 0 261 1 551 637 KAG8137473.1 hypothetical protein E2320_004718 [Naja naja] diamond 20355 168 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Naja Naja naja
30976920 30976920 PRJNA397736_S_NODE_2414_length_173_cov_6.361111_g2378_i0 PRJNA397736 2414 173 6.361111 11.00472203 Chordata 7711 Chordata Chordata 108 1.9000000000000003e-28   NR XP_043913022.1 7888 g2378 i0 98.2 92.2543352601156 56 1 97.1 0 172 5 15 70 XP_043913022.1 TSC22 domain family protein 3 isoform X2 [Protopterus annectens] diamond 15960 109 0.990825688073395 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
31466042 31466042 PRJNA397736_S_NODE_916_length_298_cov_7.368030_g880_i0 PRJNA397736 916 298 7.36803 21.9567294 Hypanus sabinus 79690 Chordata Chordata 198 2.05e-63   NR AAU29554.1 79690 g880 i0 98 55.2181208053691 98 2 98.7 0 296 3 34 131 AAU29554.1 ribosomal protein L8, partial [Hypanus sabinus] diamond 16455 199 0.994974874371859 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
31497649 31497649 PRJNA397736_S_NODE_976_length_289_cov_8.350000_g940_i0 PRJNA397736 976 289 8.35 24.1315 Pleurodeles waltl 8319 Chordata Chordata 157 6.42e-46   NR KAJ1217629.1 8319 g940 i0 98.8 45.9550173010381 82 1 85.1 0 2 247 171 252 KAJ1217629.1 hypothetical protein NDU88_005222 [Pleurodeles waltl] diamond 13281 157 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
31546035 31546035 PRJNA397736_S_NODE_1896_length_198_cov_6.668639_g1860_i0 PRJNA397736 1896 198 6.668639 13.20390522 root 1 Root_unresolved Root_unresolved 135 4.1e-38   NR XP_067886592.1 7792 g1860 i0 100 115 66 0 100 0 1 198 120 185 XP_067886592.1 60S ribosomal protein L17 isoform X1 [Heterodontus francisci] diamond 22770 135 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Heterodontiformes Heterodontidae Heterodontus Heterodontus francisci
31640681 31640681 PRJNA397736_S_NODE_1156_length_265_cov_3.648305_g1120_i0 PRJNA397736 1156 265 3.648305 9.66800825 Pipidae 8352 Chordata Chordata 48.9 2.68e-4   NR KAE8584502.1 8364 g1120 i0 95.5 10.7094339622642 22 1 24.9 0 3 68 240 261 KAE8584502.1 hypothetical protein XENTR_v10020993 [Xenopus tropicalis] diamond 2838 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
32020409 32020409 PRJNA397736_S_NODE_3058_length_150_cov_5.173554_g3022_i0 PRJNA397736 3058 150 5.173554 7.760331 Mammalia 40674 Chordata Chordata 101 2.3e-26   NR XP_006750317.2 9713 g3022 i0 95.9 69.58 49 2 98 0 148 2 7 55 XP_006750317.2 40S ribosomal protein S21-like [Leptonychotes weddellii] diamond 10437 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Phocidae Leptonychotes Leptonychotes weddellii
32400204 32400204 PRJNA397736_S_NODE_919_length_298_cov_3.349442_g883_i0 PRJNA397736 919 298 3.349442 9.98133716 Mammalia 40674 Chordata Chordata 80.1 4.4e-15   NR XP_030890132.1 9713 g883 i0 78.4 2.62751677852349 51 9 51.3 1 153 1 198 246 XP_030890132.1 palmitoyltransferase ZDHHC20 [Leptonychotes weddellii] diamond 783 80.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Phocidae Leptonychotes Leptonychotes weddellii
32589978 32589978 PRJNA397736_S_NODE_2659_length_162_cov_7.037594_g2623_i0 PRJNA397736 2659 162 7.037594 11.40090228 Squamata 8509 Chordata Chordata 111 8.600000000000001e-30   NR AAZ38997.1 8668 g2623 i0 96.2 44.1666666666667 53 2 98.1 0 161 3 36 88 AAZ38997.1 adenine nucleotide translocator, partial [Oxyuranus scutellatus] diamond 7155 112 0.991071428571429 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Oxyuranus Oxyuranus scutellatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;