RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA397733" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA397733 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29712710 29712710 PRJNA397733_S_NODE_11210_length_181_cov_2.059211_g11122_i0 PRJNA397733 11210 181 2.059211 3.72717191 root 1 Root_unresolved Root_unresolved 127 9.689999999999999e-34   NR XP_003377401.1 6334 g11122 i0 98.3 369.944751381215 60 1 99.4 0 180 1 142 201 XP_003377401.1 mitogen-activated protein kinase 1 [Trichinella spiralis] diamond 66960 127 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
30580697 30580697 PRJNA397733_S_NODE_11593_length_178_cov_2.664430_g11505_i0 PRJNA397733 11593 178 2.66443 4.7426854 Trichuris suis 68888 Nematoda Nematoda 53.1 2.11e-6   NR KFD49381.1 68888 g11505 i0 55.1 2.14044943820225 49 22 82.6 0 152 6 33 81 KFD49381.1 hypothetical protein M513_09744 [Trichuris suis] diamond 381 53.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
31577576 31577576 PRJNA397733_S_NODE_7436_length_221_cov_15.901042_g7348_i0 PRJNA397733 7436 221 15.901042 35.14130282 Opisthokonta 33154 Nematoda Nematoda 107 3.34e-27   NR NP_502077.1 6239 g7348 i0 98.2 173.837104072398 55 1 74.7 0 219 55 156 210 NP_502077.1 Small ribosomal subunit protein uS7 [Caenorhabditis elegans] diamond 38418 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;