RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA397733", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA397733 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28843679 28843679 PRJNA397733_S_NODE_9708_length_193_cov_18.359756_g9620_i0 PRJNA397733 9708 193 18.359756 35.43432908 Helicobacter pylori 210 Bacteria Bacteria 48.9 5.99e-6   NR GAA8948747.1 210 g9620 i0 73.5 0.528497409326425 34 9 52.8 0 152 51 1 34 GAA8948747.1 hypothetical protein Kyoto181A_0670 [Helicobacter pylori] diamond 102 48.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32225188 32225188 PRJNA397733_S_NODE_11818_length_176_cov_121.326531_g11730_i0 PRJNA397733 11818 176 121.326531 213.53469456 Helicobacter pylori 210 Bacteria Bacteria 84 5.76e-20   NR GAA8838853.1 210 g11730 i0 92.9 0.715909090909091 42 3 71.6 0 5 130 2 43 GAA8838853.1 hypothetical protein Kyoto149A_5200 [Helicobacter pylori] diamond 126 84 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32431793 32431793 PRJNA397733_S_NODE_16879_length_150_cov_19.752066_g16791_i0 PRJNA397733 16879 150 19.752066 29.628099 Bacteria 2 Bacteria Bacteria 76.6 2.14e-16   NR MDU9799813.1 210 g16791 i0 89.5 1.52 38 4 76 0 145 32 2 39 MDU9799813.1 hypothetical protein [Helicobacter pylori] diamond 228 76.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;