RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA397733", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 1 ✖

tax_kingdom 1

  • Pseudomonadati · 1 ✖

bioproject 1

  • PRJNA397733 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32635863 32635863 PRJNA397733_S_NODE_8460_length_207_cov_2.230337_g8372_i0 PRJNA397733 8460 207 2.230337 4.61679759 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 40.8 0.0398   NR UCD34808.1 2026770 g8372 i0 58.6 0.420289855072464 29 12 42 0 67 153 2 30 UCD34808.1 MAG: hypothetical protein JSU90_11050 [Nitrospiraceae bacterium] diamond 87 40.8 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;