RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA397733", tax_clade = "Opisthokonta" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA397733 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14441040 14441040 PRJNA397733_S_NODE_8012_length_212_cov_24.737705_g7924_i0 PRJNA397733 8012 212 24.737705 52.4439346 uncultured Glomeromycotina 241622 Fungi Fungi 357 3.53e-94   NTclustered gi|1714199062|gb|MN244751.1| 241622 g7924 i0 97.17 100.080188679245 212 5 100 1 1 212 192 402 Uncultured Glomeromycotina clone denovo3458 small subunit ribosomal RNA gene, partial sequence blastn 21217 357 1 Eukaryota Opisthokonta Fungi Mucoromycota         uncultured Glomeromycotina
22756860 22756860 PRJNA397733_S_NODE_5218_length_265_cov_9.877119_g5130_i0 PRJNA397733 5218 265 9.877119 26.17436535 Fungi 4751 Fungi Fungi 484 2.0199999999999998e-132   NTclustered gi|658131632|emb|HF968958.1| 4874 g5130 i0 99.623 133.215094339623 265 1 100 0 1 265 2006 2270 Gigaspora margarita partial 28S rRNA gene, strain BEG34, isolate spore 4, clone BL2_6_26 blastn 35302 484 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;